View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_39 (Length: 412)
Name: NF15962_low_39
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Original strand, 39757512 - 39757905
Alignment:
| Q |
14 |
agaaaggagaatatggatcctgaagagggtaaaatttctgcaactcatggcaaacaatggtgaccaagtgacacaaaacttcaccaagctctccgtgata |
113 |
Q |
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| T |
39757512 |
agaaaggagaatatggatcctgaagagggtaaaatttctgcaactcatggcaaacaatggtggccaagtgacacaaaacttcaccaagctctccgtgata |
39757611 |
T |
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| Q |
114 |
gcaaactacacataagaaggcaagttagatcgttatacatcgttacaccttgggaagtaacaaaaagattaaatccatttatttcacatcccaattgtct |
213 |
Q |
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| T |
39757612 |
gcaaactacacataagaaggcaagttagatcgttatacatcgttacaccttgggaagtaataaaaagattaaatccttttatttcacatcccaattgtct |
39757711 |
T |
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| Q |
214 |
caataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaatgacaataac |
313 |
Q |
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| T |
39757712 |
caataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaatgacaataac |
39757811 |
T |
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| Q |
314 |
aacaagatatcaagtgtaccgttaaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtcagaaaggcttctccta |
407 |
Q |
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| T |
39757812 |
aacaagatatcaagtgtaccgttgaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtcagaaaggcttctccta |
39757905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 66 - 391
Target Start/End: Original strand, 39764639 - 39764964
Alignment:
| Q |
66 |
aacaatggtgaccaagtgacacaaaacttcaccaagctctccgtgatagcaaactacacataagaaggcaagttagatcgttatacatcgttacaccttg |
165 |
Q |
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| T |
39764639 |
aacaatggtggccaagtgatgcagaacttcagcaaactattcatgatagcaaact---cataagcaggcgaattggatctttatacaccaatacaccttg |
39764735 |
T |
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| Q |
166 |
ggaagtaacaaaaagattaaatccatttatttcacatcccaattgtctcaataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaa |
265 |
Q |
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||| |||||||||||||||||||| |||||||||| ||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| | |||| |
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| T |
39764736 |
ggacgtaacaaaaagattaaatccttttatttcacttcccatttgtcttgataatatcagacaaaaagaagaatttttatggaaatggaatactgctaaa |
39764835 |
T |
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| Q |
266 |
tccatacttctttcaagtagtgaaactcaaatgaaaaatgacaataac---aacaagatatcaagtgtaccgttaaagagttggatgccttcactatcag |
362 |
Q |
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| T |
39764836 |
tccatacttctttcaagtagtgaaactcatgtgaataatgacgatgacgataacaagacatcaagtgtaccattgaagaattggatgccttcactgtcag |
39764935 |
T |
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| Q |
363 |
gcttcagggatgttggttttgctttggtc |
391 |
Q |
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| T |
39764936 |
gcttcgggggtgctggtttttctgtggtc |
39764964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 39764324 - 39764385
Alignment:
| Q |
228 |
aaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaa |
289 |
Q |
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|||| ||||||||| ||||||||||||||||| | ||| ||| |||| ||||||||||||| |
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| T |
39764324 |
aaaaggaagaatttatatggaaatggaatagtctcaaaaccacgcttccttcaagtagtgaa |
39764385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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