View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_low_4 (Length: 587)
Name: NF15962_low_4
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 23869164 - 23868733
Alignment:
| Q |
17 |
catcattatgatacacagaaaaaccaaccagatccaattactacttcactacaaattcgaaagcaaaaaattaaaatatctaagagttcctaagatcaga |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23869164 |
catcattatgatacacagaaagaccaaccagatccaattactacttcactacaaattcgaaagcaaaaatttaaaatatctaagagttcctaagatcaga |
23869065 |
T |
|
| Q |
117 |
taaagtaacatcaaaccaagcaaataaatcccacaaaagtcaacgaaattatcttagatctaagaactagtgaacttagtcacagcttttgttccttcag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23869064 |
taaagtaacatcaaaccaagcaaataaatcccacaaaagtcaacgaaattatcttagatctaagaactagtgaacttagtcacagcttttgttccttcag |
23868965 |
T |
|
| Q |
217 |
aaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtct |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868964 |
aaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtct |
23868865 |
T |
|
| Q |
317 |
ggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttc |
416 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23868864 |
ggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgcttc |
23868765 |
T |
|
| Q |
417 |
agaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
23868764 |
agaactttgaagatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 174 - 448
Target Start/End: Complemental strand, 24307498 - 24307224
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24307498 |
atctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaattt |
24307399 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307398 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcc |
24307299 |
T |
|
| Q |
374 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
24307298 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 172 - 452
Target Start/End: Original strand, 23453373 - 23453653
Alignment:
| Q |
172 |
agatctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaat |
271 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23453373 |
agatctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaat |
23453472 |
T |
|
| Q |
272 |
ttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattatt |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23453473 |
ttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgata |
23453572 |
T |
|
| Q |
372 |
cccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
452 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23453573 |
cccatggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 175 - 452
Target Start/End: Original strand, 23408544 - 23408821
Alignment:
| Q |
175 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23408544 |
tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttc |
23408643 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23408644 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23408743 |
T |
|
| Q |
375 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
452 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23408744 |
atcgctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 174 - 452
Target Start/End: Complemental strand, 23402349 - 23402071
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23402349 |
atctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaattt |
23402250 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
23402249 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc |
23402150 |
T |
|
| Q |
374 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
452 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23402149 |
catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 174 - 448
Target Start/End: Complemental strand, 23886102 - 23885828
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23886102 |
atctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaattt |
23886003 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
23886002 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc |
23885903 |
T |
|
| Q |
374 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23885902 |
catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 175 - 448
Target Start/End: Original strand, 23415713 - 23415986
Alignment:
| Q |
175 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
274 |
Q |
| |
|
||||||| ||||| |||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415713 |
tctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc |
23415812 |
T |
|
| Q |
275 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
23415813 |
ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc |
23415912 |
T |
|
| Q |
375 |
atggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23415913 |
atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 174 - 448
Target Start/End: Complemental strand, 26833010 - 26832736
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
26833010 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
26832911 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || || |
|
|
| T |
26832910 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacc |
26832811 |
T |
|
| Q |
374 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26832810 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 174 - 448
Target Start/End: Complemental strand, 26434299 - 26434025
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
26434299 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
26434200 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || || |
|
|
| T |
26434199 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacc |
26434100 |
T |
|
| Q |
374 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26434099 |
catggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 174 - 448
Target Start/End: Complemental strand, 26436079 - 26435805
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
||||||||||| || |||||||| ||||| || || || ||||||||| ||||||||||||||||||| || |||||||| ||||| || |||||||||| |
|
|
| T |
26436079 |
atctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaattt |
26435980 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || || |
|
|
| T |
26435979 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacc |
26435880 |
T |
|
| Q |
374 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26435879 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 174 - 448
Target Start/End: Original strand, 34662044 - 34662318
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt |
273 |
Q |
| |
|
||||||||||| || ||||| || |||||||| || || ||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||| |
|
|
| T |
34662044 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaattt |
34662143 |
T |
|
| Q |
274 |
cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc |
373 |
Q |
| |
|
|||| ||||| || || ||||||||||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
34662144 |
ccctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacc |
34662243 |
T |
|
| Q |
374 |
catggctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
34662244 |
catggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 227 - 359
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
227 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
326 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
327 |
tgagcaagcttctcgaagatatcattgatgaaa |
359 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 483 - 587
Target Start/End: Original strand, 23416018 - 23416122
Alignment:
| Q |
483 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctg |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
23416018 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg |
23416117 |
T |
|
| Q |
583 |
gtttc |
587 |
Q |
| |
|
||||| |
|
|
| T |
23416118 |
gtttc |
23416122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 483 - 587
Target Start/End: Complemental strand, 26832701 - 26832597
Alignment:
| Q |
483 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctg |
582 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26832701 |
ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26832602 |
T |
|
| Q |
583 |
gtttc |
587 |
Q |
| |
|
||||| |
|
|
| T |
26832601 |
gtttc |
26832597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 483 - 587
Target Start/End: Complemental strand, 26433990 - 26433886
Alignment:
| Q |
483 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctg |
582 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26433990 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26433891 |
T |
|
| Q |
583 |
gtttc |
587 |
Q |
| |
|
||||| |
|
|
| T |
26433890 |
gtttc |
26433886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 483 - 587
Target Start/End: Complemental strand, 26435770 - 26435666
Alignment:
| Q |
483 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctg |
582 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26435770 |
ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg |
26435671 |
T |
|
| Q |
583 |
gtttc |
587 |
Q |
| |
|
||||| |
|
|
| T |
26435670 |
gtttc |
26435666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 492 - 587
Target Start/End: Complemental strand, 23402031 - 23401936
Alignment:
| Q |
492 |
gaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctggtttc |
587 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
23402031 |
gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttc |
23401936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 486 - 587
Target Start/End: Complemental strand, 24307186 - 24307085
Alignment:
| Q |
486 |
gcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctggtt |
585 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
586 |
tc |
587 |
Q |
| |
|
|| |
|
|
| T |
24307086 |
tc |
24307085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 492 - 587
Target Start/End: Original strand, 23408861 - 23408956
Alignment:
| Q |
492 |
gaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctggtttc |
587 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
23408861 |
gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttc |
23408956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 483 - 587
Target Start/End: Complemental strand, 23868698 - 23868594
Alignment:
| Q |
483 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctg |
582 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23868698 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg |
23868599 |
T |
|
| Q |
583 |
gtttc |
587 |
Q |
| |
|
||||| |
|
|
| T |
23868598 |
gtttc |
23868594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 483 - 587
Target Start/End: Complemental strand, 23885793 - 23885689
Alignment:
| Q |
483 |
ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctg |
582 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
23885793 |
ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg |
23885694 |
T |
|
| Q |
583 |
gtttc |
587 |
Q |
| |
|
||||| |
|
|
| T |
23885693 |
gtttc |
23885689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 587
Target Start/End: Original strand, 34662359 - 34662457
Alignment:
| Q |
489 |
gctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctggtttc |
587 |
Q |
| |
|
|||||||| | ||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
34662359 |
gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttc |
34662457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 495 - 587
Target Start/End: Original strand, 23453696 - 23453788
Alignment:
| Q |
495 |
ccaccttcctttggtagcttcttccctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgctggtttc |
587 |
Q |
| |
|
||||||||||| || |||||||| || ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||||| |
|
|
| T |
23453696 |
ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttc |
23453788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 178 - 448
Target Start/End: Complemental strand, 41670671 - 41670401
Alignment:
| Q |
178 |
aagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct |
277 |
Q |
| |
|
|||| |||||||| || || ||||| || ||||| ||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| |
|
|
| T |
41670671 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
41670572 |
T |
|
| Q |
278 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatg |
377 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
41670571 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
41670472 |
T |
|
| Q |
378 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|| |||||||||||||||||||| || ||||| || || ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
41670471 |
gccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 192 - 451
Target Start/End: Complemental strand, 40796026 - 40795767
Alignment:
| Q |
192 |
ttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttg |
291 |
Q |
| |
|
||||| || ||||| ||||| || || ||||| |||||||| | ||| || |||||||| || | || ||||||||||| || | || ||||| || | |
|
|
| T |
40796026 |
ttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtag |
40795927 |
T |
|
| Q |
292 |
gcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagat |
391 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| |
|
|
| T |
40795926 |
gtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagat |
40795827 |
T |
|
| Q |
392 |
accaatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctac |
451 |
Q |
| |
|
|||||||| || ||||| || || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
40795826 |
tccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 33216717 - 33216594
Alignment:
| Q |
177 |
taagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc |
276 |
Q |
| |
|
||||||| ||| ||||| |||||||| || || || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| || |
|
|
| T |
33216717 |
taagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttcc |
33216618 |
T |
|
| Q |
277 |
ttgaagtgattgttggcttcttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33216617 |
ttgaagtgattgttggcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 198 - 448
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
| Q |
198 |
acagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
297 |
Q |
| |
|
||||| || |||||||| ||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || |||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct |
29391618 |
T |
|
| Q |
298 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
397 |
Q |
| |
|
||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| || |
|
|
| T |
29391617 |
tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat |
29391518 |
T |
|
| Q |
398 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|| || ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
29391517 |
atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
320 |
tgattcttgagcaagcttctcgaagatatcattgatg |
356 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 45576478 - 45576399
Alignment:
| Q |
174 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaag |
253 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| || || ||||||||| ||||||| ||||||||| | || |||||||| |
|
|
| T |
45576478 |
atctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag |
45576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 177 - 300
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
| Q |
177 |
taagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc |
276 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || || ||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |||||||||| |
|
|
| T |
47317554 |
taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc |
47317455 |
T |
|
| Q |
277 |
ttgaagtgattgttggcttcttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47317454 |
ttgaagtgattgttggcttcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 210 - 448
Target Start/End: Original strand, 40180309 - 40180547
Alignment:
| Q |
210 |
ccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgag |
309 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||||||| || | || |
|
|
| T |
40180309 |
ccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttcttgttatacctag |
40180408 |
T |
|
| Q |
310 |
caagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaac |
409 |
Q |
| |
|
| | | || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |
|
|
| T |
40180409 |
ccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaac |
40180508 |
T |
|
| Q |
410 |
ttgtttcagaactttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
40180509 |
ctgtttcagaaccttgaagatgtatatcttgtaggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
320 |
tgattcttgagcaagcttctcgaagatatcattgatg |
356 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 323 - 448
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
323 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaact |
422 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| ||||| |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
423 |
ttgaatatgtagatcttgtatgtttc |
448 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
| Q |
213 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
265 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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