View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_40 (Length: 407)
Name: NF15962_low_40
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 13409812 - 13410202
Alignment:
| Q |
17 |
atcccagtagtcattggtgaagctaggcatgtaagattttgtgatacaattatcatttcccatgtttctacttttaatacaatttgcttgaagaacttca |
116 |
Q |
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| T |
13409812 |
atcccagtagtcattggtgaagctaggcatgtaagattttgtgatacaattatcatttcccatgtttctacttttaatacaatttgcttgaagaacttca |
13409911 |
T |
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| Q |
117 |
tgttcattttcaacaattagtggcatcttgatagagcaagaggatgttctagatgagaagttcaaagtaccatgtaatccactagttgatgtagtagctt |
216 |
Q |
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| T |
13409912 |
tgttcattttcaacaattagtggcatcttgatagagcaagaggatgttctagatgagaagttcaaagtaccatgtaatccactagttgatgtagtagctt |
13410011 |
T |
|
| Q |
217 |
gtccattagcacatcctaaacctgccatcagtacaagnnnnnnnagaaccctaaaaaggaaaataga-ttttttcattgataggacttaggagtagaaga |
315 |
Q |
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| T |
13410012 |
gtccattagcacatcctaaacctgccatcagtacaagtttttttagaaccctaaaaaggaaaatagatttttttcattgataggacttaggagtagaaga |
13410111 |
T |
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| Q |
316 |
ctctagactcgtacatgtttgggttaacttatttcatttttctattgacataagtatttacgaggcattttaagagagcataaagaaacaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
13410112 |
ctctagactcgtacatgtttgggttaacttatttgatttttctattgacataagtatttacgagacattttaagagagcatatagaaacaa |
13410202 |
T |
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