View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_41 (Length: 406)
Name: NF15962_low_41
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 34725089 - 34724698
Alignment:
| Q |
1 |
cataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacnnnnnnnnnnn----gaggtaaaatttgaattagagccgtttgga |
96 |
Q |
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| T |
34725089 |
cataccaaaaatcattttctttgtcatatagcaaagtgcagttctaaatttgaacatttattttttttttgaggtaaaatttgaattagagccgtttgga |
34724990 |
T |
|
| Q |
97 |
ttttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttataagtgtttgtacccgtatataatggatttaaacatctgtgtaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34724989 |
ttttattttcattttatgatacaagtttgaattacaaaaatatcatttccgtttccaagtgtttgtacccgtatataatggatttaaatatctgtgtaaa |
34724890 |
T |
|
| Q |
197 |
atagttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattgtaaggatgttttgagattagtagagtatgatatggataaatg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34724889 |
atagttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattgtaaggatgttttgagattagtagagtatgatatggataaatg |
34724790 |
T |
|
| Q |
297 |
gtggtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataaatctctcgagggagagttatgccaccaatt |
388 |
Q |
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| T |
34724789 |
gtggtttctcatctgatatcagagtacatgctcattgaactctttataaatgacccttataaatctcttgagggagagttatgccaccaatt |
34724698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 339
Target Start/End: Complemental strand, 34729063 - 34728912
Alignment:
| Q |
190 |
gtgtaaaatagttttacactaacatccaatgaaaacctattgttttgtcaatcacctcactattg----taaggatgttttgagattagtagagtatgat |
285 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||||| | ||||||||||||| ||||||| |||||| |||||||| || | |
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| T |
34729063 |
gtgtaaaatagttttacattgagatccaatgaaaacctattgttttagcggtcacctcactatttattataaggatattttgaaattagtag--tacggc |
34728966 |
T |
|
| Q |
286 |
atggataaatggtggtttctcatctgatatcagagtacatgctcattgaactct |
339 |
Q |
| |
|
|||||||||| ||||||||||| ||| || ||||| | |||||||||||||| |
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| T |
34728965 |
atggataaattttggtttctcattggatgtcggagtataagctcattgaactct |
34728912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 6453284 - 6453252
Alignment:
| Q |
190 |
gtgtaaaatagttttacactaacatccaatgaa |
222 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
6453284 |
gtgtaaaatagttttacactaacatgcaatgaa |
6453252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 36636342 - 36636378
Alignment:
| Q |
190 |
gtgtaaaatagttttacactaacatccaatgaaaacc |
226 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||| |
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| T |
36636342 |
gtgtaaaatagttttacactgacatccaatgagaacc |
36636378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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