View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_45 (Length: 397)
Name: NF15962_low_45
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 382
Target Start/End: Complemental strand, 2972480 - 2972109
Alignment:
| Q |
11 |
atgaatatgatttattgtatcgagttgatgattcaattaagactgatctcataatagcgaaatattgtttaacgcgaaatcgtcccggcatgtttaccac |
110 |
Q |
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| T |
2972480 |
atgaatatgatttattgtatcgagttgatgattcaattaagactaatctcataatagcgaaatgttgtttaacgcgaaatcgtcccgaagtgtttaccac |
2972381 |
T |
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| Q |
111 |
ctaagtttatattaataacatcatccnnnnnnnnncaatagcatgccgtgaattttgtaaatccctgttttttgattggctaatttatcattcacgatcc |
210 |
Q |
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| T |
2972380 |
ctaagtttatattaatgacatcatcctttttttctcaatagcatgccgtgaattccgtaaatccctgttttttgattggctaatttatcattcgcgatcc |
2972281 |
T |
|
| Q |
211 |
tttctggataatttctctcgttggatttagcagttctcctcataatataagagcctcaactagaagaagaggtgcatatggtataaatataagaataatg |
310 |
Q |
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| T |
2972280 |
tttctggataatttctctcgctagatttagcagttctcctcataatataagaggctcaactagaagaagaggtgcatatggtataaatataagaataatg |
2972181 |
T |
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| Q |
311 |
ctatatgtatcccgacaatttttgtcgcggcaaattcacgactgtataaaataacatgtttatcacctcctt |
382 |
Q |
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| T |
2972180 |
ctatatatatcccgacaatttttgtcccggcaaattcacgactgtataaaataacatgtttatcacctcctt |
2972109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 2979525 - 2979472
Alignment:
| Q |
11 |
atgaatatgatttattgtatcgagttgatgattcaattaagactgatctcataa |
64 |
Q |
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| T |
2979525 |
atgaatatgatttattgtatcgagttgatgattcaattaagactaatctcataa |
2979472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 29355520 - 29355598
Alignment:
| Q |
170 |
aatccctgttttttgattggctaatttatcattcacgatcctttctggataatttctctcgttggatttagcagttctc |
248 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||| || ||||||||| |||||| |||||||||||||| |
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| T |
29355520 |
aatccctattttttgattggctaatttatcattcgctatcctgtcgggataatttgcttcgttgtatttagcagttctc |
29355598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 42431743 - 42431671
Alignment:
| Q |
152 |
catgccgtgaattttgtaaatccctgttttttgattggctaatttatcattcacgatcctttctggataattt |
224 |
Q |
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| T |
42431743 |
catgccgtgaattccgcaaagctctgttttgtcattggctaatttctctttcactatcctttcgggataattt |
42431671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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