View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_46 (Length: 391)
Name: NF15962_low_46
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_46 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 38726302 - 38725925
Alignment:
| Q |
1 |
ttaatgttacaaaatggagtaagatggagagaattattaaagctaaaggtacaaatcataattctagtttacaaataacaacaaaaactaaaggggtgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38726302 |
ttaatgttacaaaatggagtaagatggagagaattattaaagctaaaggtacaaatcataattctagtttacaaataacaacaaaaactaaaggggtgat |
38726203 |
T |
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| Q |
101 |
atggttagatcaagtgtcagctatgccttcggatacatataaaggtcatggttttcgaagtgatctttttaaaatggtggcagatttgaaaccaaatttt |
200 |
Q |
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| T |
38726202 |
aaggttagatcaagtgtcagctatgccttcggatacatataacggtcatggttttcgaagtgatctttttaaaatggtggcagatttgaaaccaaatttt |
38726103 |
T |
|
| Q |
201 |
ttaaggttcttgggtggtacttatgttgaaggaaacagtctaaaatatgcttttaggtggaaagaaacagttgggccaagggaagagagatccggccact |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38726102 |
ttaaggttcttgggtggtacttaggttgaaggaaacagtctaaaatatgcttttaggtggaaagaaacagttgggccaagggaagagagatccggccact |
38726003 |
T |
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| Q |
301 |
ggaacgacgtttacagttattggagtgacgatggattaggttattttgaaggtctccaactagcagaggatcttggtg |
378 |
Q |
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| T |
38726002 |
ggaacgacgtttacagttattggagtgacgatggattaggttattttgaaggtctccaactagcagaggatcttggtg |
38725925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 29455 - 29596
Alignment:
| Q |
1 |
ttaatgttacaaaatggagtaagatggagagaattattaaagctaaaggtacaaatcataattctagtttacaaataacaacaaaaactaaaggggtgat |
100 |
Q |
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| T |
29455 |
ttaatgttacaaagtggagtaggatggagacaattcttgaagctaatggtacaaatcataattcaagtctacaaataacaacaagcaatagaggggtagt |
29554 |
T |
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| Q |
101 |
atggttagatcaagtgtcagctatgccttcggatacatataa |
142 |
Q |
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| T |
29555 |
atggttagatcaagtgtcagctatgcccttggatacatataa |
29596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 34153434 - 34153293
Alignment:
| Q |
1 |
ttaatgttacaaaatggagtaagatggagagaattattaaagctaaaggtacaaatcataattctagtttacaaataacaacaaaaactaaaggggtgat |
100 |
Q |
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||||||||||||| ||||||| |||||||| |||| || ||||||| ||||||||||||||||| ||| ||||||||||||||| | || |||||| | |
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| T |
34153434 |
ttaatgttacaaagtggagtaggatggagacaattcttgaagctaatggtacaaatcataattcaagtctacaaataacaacaagcaatagaggggtagt |
34153335 |
T |
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| Q |
101 |
atggttagatcaagtgtcagctatgccttcggatacatataa |
142 |
Q |
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| T |
34153334 |
atggttagatcaagtgtcagctatgcccttggatacatataa |
34153293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34169133 - 34169274
Alignment:
| Q |
1 |
ttaatgttacaaaatggagtaagatggagagaattattaaagctaaaggtacaaatcataattctagtttacaaataacaacaaaaactaaaggggtgat |
100 |
Q |
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||||||||||||| ||||||| |||||||| |||| || ||||||| ||||||||||||||||| ||| ||||||||||||||| | || |||||| | |
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| T |
34169133 |
ttaatgttacaaagtggagtaggatggagacaattcttgaagctaatggtacaaatcataattcaagtctacaaataacaacaagcaatagaggggtagt |
34169232 |
T |
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| Q |
101 |
atggttagatcaagtgtcagctatgccttcggatacatataa |
142 |
Q |
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| T |
34169233 |
atggttagatcaagtgtcagctatgcccttggatacatataa |
34169274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34209343 - 34209484
Alignment:
| Q |
1 |
ttaatgttacaaaatggagtaagatggagagaattattaaagctaaaggtacaaatcataattctagtttacaaataacaacaaaaactaaaggggtgat |
100 |
Q |
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||||||||||||| ||||||| |||||||| |||| || ||||||| ||||||||||||||||| ||| ||||||||||||||| | || |||||| | |
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| T |
34209343 |
ttaatgttacaaagtggagtaggatggagacaattcttgaagctaatggtacaaatcataattcaagtctacaaataacaacaagcaatagaggggtagt |
34209442 |
T |
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| Q |
101 |
atggttagatcaagtgtcagctatgccttcggatacatataa |
142 |
Q |
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||||||||||||||||||||||||||| | |||||||||||| |
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| T |
34209443 |
atggttagatcaagtgtcagctatgcccttggatacatataa |
34209484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 34430672 - 34430725
Alignment:
| Q |
147 |
catggttttcgaagtgatctttttaaaatggtggcagatttgaaaccaaatttt |
200 |
Q |
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|||||||| |||||||||||| || ||||| ||| |||||||||||||| |||| |
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| T |
34430672 |
catggtttccgaagtgatcttcttcaaatgctggtagatttgaaaccaagtttt |
34430725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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