View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_47 (Length: 388)
Name: NF15962_low_47
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 1280704 - 1281075
Alignment:
| Q |
18 |
tataggatcacgtgattaatattaaatacaacgtgcacgtgttttttatattatcttggtcattgaaagacaataatgtgcatgcgtttagttgtgttta |
117 |
Q |
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| T |
1280704 |
tataggatcacgtgattaatattaaatacaacgtgcatgtgttttttatattatcttggccattgaaagacaataacgtgcatgcgtttagttgtgttta |
1280803 |
T |
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| Q |
118 |
taaaatacgatgtgcatttgttgcatgtattatactatgctataccattcattctgtcaaaaaa---------------caacaatatcgtaacacaagt |
202 |
Q |
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| T |
1280804 |
taaaatacgatgtgcatttgttgcatgtattatactatgatatatcattcattctgtcataaaaaaaaaaaaaaaaaatcaacaatatcgtaacacaagt |
1280903 |
T |
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| Q |
203 |
aaggtttacgcatttttaagggttgacttaatgtttgaagatttataagcattcaaatttcaaataattatcagattagaagagaacaagagaagtattt |
302 |
Q |
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| T |
1280904 |
aaggtttacacatttttaagggttgacttaatgtttgaagatttataagcattcaaatttccaataattatcagattagaagagaacaagagaagtattt |
1281003 |
T |
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| Q |
303 |
aaagtttg-ttacaat-gatggagttacttcttagaattatc--atatatatatcatgattcgaagatcaag |
370 |
Q |
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| T |
1281004 |
aaagtttgtttacaatggatggagttacttcttagaattatcatatatatatatcatgattcgaagatcaag |
1281075 |
T |
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