View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_48 (Length: 388)
Name: NF15962_low_48
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 27700395 - 27700022
Alignment:
| Q |
16 |
aatattcacacttctcaccactagttcaatcctagtgggtaggccaagcagtttgaaaatgatggaagaaaatcaatgattaattatatcttagttgaaa |
115 |
Q |
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| T |
27700395 |
aatattcacacttctcaccactagttcaatcctagtgggtaggccaagcagtttgaaaatgatggaagaaaatcaatgattaattatatcttagttgaaa |
27700296 |
T |
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| Q |
116 |
gcggcaaaaatacaaagtaatatggcaagcagcatcctttattcttgtaatcttatcttccttttcttgaggaatatatgctgtacccacctccattggt |
215 |
Q |
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| T |
27700295 |
gcggctaaaatacaaagtaatatggcaagcagcatcctttattcttgtaatcttatcttccttttcttgaggaatatatgctgtacccacctccattggt |
27700196 |
T |
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| Q |
216 |
aa-aaaacaacaaatggagctcttgcattgattcctttcattgtctcttctccaacacccactatatgctccaataaatatgcctgcaacctgttttatt |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27700195 |
aaaaaaacaacaaatggagctcttgcattgattcctttcattgtctcttctccaacacccactatatgctccaataaatatgcctgcaacctgttttatt |
27700096 |
T |
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| Q |
315 |
tcttgtagtttgctagtattctccaatccatactgagaagagaagcacttgaatatggcgtccaagagaatagt |
388 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27700095 |
tcttgtaatttgctagtattctccaatccatactgagaagagaagcacttgaatatggcgtccaagagaatagt |
27700022 |
T |
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