View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_49 (Length: 385)
Name: NF15962_low_49
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 4 - 370
Target Start/End: Complemental strand, 7417117 - 7416751
Alignment:
| Q |
4 |
catctatatttcggctcgaaacccgtcattgtgggcgccaccgtagaactagccaaatcattcctcaaaacccatgatgctactcttgccggccggccca |
103 |
Q |
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| T |
7417117 |
catctatatttcggctcgaaacccgtcattgtgggcgccaccgtagaactagccaaatcattcctcaaaacccatgatgctactcttgccggccggccca |
7417018 |
T |
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| Q |
104 |
aattgtcggctggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattgga |
203 |
Q |
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| T |
7417017 |
aattgtcggctggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattgga |
7416918 |
T |
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| Q |
204 |
gttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaatt |
303 |
Q |
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| T |
7416917 |
gttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaatt |
7416818 |
T |
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| Q |
304 |
ttggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagt |
370 |
Q |
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| T |
7416817 |
ttggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggtgctagggaaaaagt |
7416751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 88 - 356
Target Start/End: Complemental strand, 7426019 - 7425751
Alignment:
| Q |
88 |
cttgccggccggcccaaattgtcggctggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgta |
187 |
Q |
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| T |
7426019 |
cttgctgggcggcccaaattctccgctggaaaatatactacttataactactccaacattacttggtcccaatatggcccatattggcaacaagctcgta |
7425920 |
T |
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| Q |
188 |
gaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattc |
287 |
Q |
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| T |
7425919 |
aaatgtgtctgctagaactgtttagtgtaaaacgccttgagtcttatgagtacatgagaaaacaagagttacatgctttcttgcacgaactatttaattc |
7425820 |
T |
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| Q |
288 |
aaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtctaaatgttataagtcgaatggt |
356 |
Q |
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| T |
7425819 |
aaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgcatggt |
7425751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 7431981 - 7431739
Alignment:
| Q |
115 |
ggaaaatacacaacatataactattcagacataacttggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtg |
214 |
Q |
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| T |
7431981 |
ggaaaatacacaacttataactactctaacatcacttggaacccatacggtccatattttcaacaagcccgtaaaatgtttcaaagggaattgtttagtg |
7431882 |
T |
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| Q |
215 |
caaaacgcctcgagtcttacgagtacataagaaaacaagagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaaga |
314 |
Q |
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|||| | ||||||||||| |||||||| |||||| |||| | ||| |||| |||||||||| |||||||||||||| ||||| |||||| |||| || |
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| T |
7431881 |
taaaaagtctcgagtcttatgagtacatgagaaaagaagaattacatatttttctgcataaactcttcaattcaaaaaataaaactattttgttgaagga |
7431782 |
T |
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| Q |
315 |
ccatctttcaactttgagtctaaatgttataagtcgaatggtg |
357 |
Q |
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| T |
7431781 |
ccatctttcaacttttagtcttaatattataagccgcatggtg |
7431739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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