View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_5 (Length: 576)
Name: NF15962_low_5
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 4933131 - 4932568
Alignment:
| Q |
1 |
ggagagacattctatgtcgccggactcgtctcatggctcaatagatgcattagatgaaacgacaaatttgcctttggggaaggacaatattaaaacatca |
100 |
Q |
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| T |
4933131 |
ggagagacattctatgtcgccggactcgtcttatggctcaatagatgcattagatgaaacgacaaatttgcctttggggaaggacaatattaaaacatca |
4933032 |
T |
|
| Q |
101 |
aaacaaaaaatagatttagttttgaaggacgatgaccatgataaaaccaaaacatcgacaaatgtcaatacaaatacattggaaaaaattcatgaagatc |
200 |
Q |
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| T |
4933031 |
aaagaaaaaatagatttagttttgaaggacgatgaccatgataaaaccaaaacatcgacaaatgtcaatacaaatacattggacaaaattcatgaagatc |
4932932 |
T |
|
| Q |
201 |
gtaataaagcggtggcggttcctagtgaagaacctaagaattatgcgacgaatgtctcgtaccgttcagtcgaaagcgatatgagcaaccattcatttca |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4932931 |
ataataaagcggtggtggttcctagtgaagaacctaagaattatgcgaccaatgtctcgtaccgttcagtcgaaagcgatatgagcaaccattcatttca |
4932832 |
T |
|
| Q |
301 |
atttcctatgtgagtctctcatcatatcttcttgcttgtatgtgtatgtcattatgctctataatttatattagaggtgtaattataatcatttcagttt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4932831 |
atttcctatgtgagtctctcatcatatcttcttgcttatatgtgtatgtcattatgctctataatttatattagaggtgtaattataatcattttagttt |
4932732 |
T |
|
| Q |
401 |
catatattttcattttagattttgttctttaaagcaatactaagtataatgaatttgattatttttaaacgggtt----tatagggtatgctattaacca |
496 |
Q |
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||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4932731 |
catatattttcattttagattttgttcttcaaagcaatacaatgtataatgaatttgattatttttaaacgggtttatatatagggtatgctattaacca |
4932632 |
T |
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| Q |
497 |
ttattatttttcttga-nnnnnnnnctttctagattaacagctgatggagtaagaactagttca |
559 |
Q |
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| T |
4932631 |
ttattatttttcttgatttttttttcttcctagattaacagctgatggagtaagaactagttca |
4932568 |
T |
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