View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_52 (Length: 371)

Name: NF15962_low_52
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_52
NF15962_low_52
[»] chr8 (9 HSPs)
chr8 (1-358)||(2055750-2056107)
chr8 (47-358)||(2051893-2052199)
chr8 (140-358)||(2058954-2059169)
chr8 (95-358)||(1948013-1948273)
chr8 (115-355)||(2029763-2030000)
chr8 (76-358)||(10769407-10769686)
chr8 (118-355)||(2034681-2034915)
chr8 (118-355)||(2038759-2038993)
chr8 (93-355)||(2048002-2048261)
[»] chr2 (4 HSPs)
chr2 (174-357)||(28734895-28735078)
chr2 (175-358)||(28699396-28699579)
chr2 (172-234)||(28782846-28782908)
chr2 (172-355)||(28742026-28742209)
[»] chr4 (1 HSPs)
chr4 (104-351)||(48904799-48905046)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 2056107 - 2055750
Alignment:
Q  1 atcatgtttatgagttcatatcacaaattcacaatcaagtggaattgatgaaaccaactcacaaagatctgacaattatttatacgagctaatgtttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2056107 atcatgtttatgagttcatatcacaaattcacaatcaagtggaattgatgaaaccaactcacaaagatctgacaattatttatacgagctaatgtttttt 2056008  T
Q  101 ctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2056007 ctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtag 2055908  T
Q  201 tttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagcatgcaac 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2055907 tttctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggatgctttaagtcccgtcgagaaaaagcatgcaac 2055808  T
Q  301 agatattcttggacc-attgtcatttgccagtactctatgttcaacactcttgaatttg 358  Q
    ||||||||||||||| | ||| ||| || |||||||||||| |||||||||||||||||    
T  2055807 agatattcttggaccaactgt-attggcaagtactctatgtacaacactcttgaatttg 2055750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 47 - 358
Target Start/End: Complemental strand, 2052199 - 2051893
Alignment:
Q  47 gatgaaaccaactcacaaagatctgacaattatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaag 146  Q
    ||||| ||||||||||||||||||| |||||||||||  |||||||| |||||||| |||||||||| ||||||||| |||||||||  ||| |||||||    
T  2052199 gatgataccaactcacaaagatctgtcaattatttat--gagctaatattttttctgccacattgcttagttcaaatcttgtaatgtgtaagagcagaag 2052102  T
Q  147 taccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcat 246  Q
    ||||||||| |||||||||||||||||||   ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||  |||||||||||    
T  2052101 taccatctagtccttttgctcgaaagtag---gctacataatcagcaacagaagtttctctgtatttgggaggattgtcttctgatagcagttccttcat 2052005  T
Q  247 tggtccatagagctttgaggatgctttaagtcccgttgagaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaaca 346  Q
     ||||||||||||||||| |||||||||||| | || ||||||||||||||||| |||||||||||||||   | |||||| |||||||||||| |||||    
T  2052004 aggtccatagagctttgaagatgctttaagtgctgtggagaaaaagcatgcaacggatattcttggaccaacttgatttgcaagtactctatgtacaaca 2051905  T
Q  347 ctcttgaatttg 358  Q
    ||||||||||||    
T  2051904 ctcttgaatttg 2051893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 140 - 358
Target Start/End: Complemental strand, 2059169 - 2058954
Alignment:
Q  140 gcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagtt 239  Q
    |||||||||||||||| || ||||||||||||| ||   ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  2059169 gcagaagtaccatctagtctttttgctcgaaagcag---gctacataatcagcaacagaagtttctctgtatttgggaggattgtcttctgataatagtt 2059073  T
Q  240 ccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatg 339  Q
    ||||||||||||||||||| ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||   | ||| || | |||||||||    
T  2059072 ccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaacagatattcttggaccaacttgattggcaattactctatg 2058973  T
Q  340 ttcaacactcttgaatttg 358  Q
    | |||||||||||||||||    
T  2058972 tacaacactcttgaatttg 2058954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 95 - 358
Target Start/End: Original strand, 1948013 - 1948273
Alignment:
Q  95 ttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaa 194  Q
    |||||||| ||||| |||  ||||||||| |||||||||  ||| |||||||||||||||| ||||||||||  |||||||   ||| ||||||||||||    
T  1948013 ttttttcttccacactgcctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctttaaagtag---gctgcataatcagcaa 1948109  T
Q  195 cagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagca 294  Q
    | || |||||| | ||||| | |||||| | ||||||||||||||||||||| ||||||||||||||||| ||||   |||| || ||||| ||||||||    
T  1948110 ctgtggtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttgacgatggcctaagacctgttgaaaaaaagca 1948209  T
Q  295 tgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttg 358  Q
    ||||||||||||||||||||||   | |||||| | ||||||||||||||||||||||||||||    
T  1948210 tgcaacagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatttg 1948273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 115 - 355
Target Start/End: Complemental strand, 2030000 - 2029763
Alignment:
Q  115 agttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtattta 214  Q
    ||||||||| |||||||||  ||| |||||||||||||||| |||||||||   ||   |||||||| || |||||||||| || |||||| |||||||     
T  2030000 agttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcattaa---agtaggctgcaaaatcagcaactgtggtttctctgtatttg 2029904  T
Q  215 ggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagcatgcaacagatattcttggac 314  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||   |||| || || |||||||||||||||||||||||||||||||    
T  2029903 ggaggattgttttctgataatagttccttcataggtccatagagctttgacgatggcctaaggcctgtggagaaaaagcatgcaacagatattcttggac 2029804  T
Q  315 cattgtcatttgccagtactctatgttcaacactcttgaat 355  Q
    ||   | |||||| | |||||||||||||||||||||||||    
T  2029803 caacttgatttgcaactactctatgttcaacactcttgaat 2029763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 76 - 358
Target Start/End: Complemental strand, 10769686 - 10769407
Alignment:
Q  76 ttatttatacgagctaatgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtag 175  Q
    |||||| || |||||||| |||||||| |||||||||| ||||||||| |||||||||  ||| |||||||||||||||| ||||||||||  ||   |     
T  10769686 ttatttgtatgagctaatattttttcttccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttcaa---aa 10769590  T
Q  176 taggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaa 275  Q
    ||||||||||| |||||||| |  |||||| ||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||   ||     
T  10769589 taggctacatagtcagcaactgaggtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctat 10769490  T
Q  276 gtcccgttgagaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttg 358  Q
    | || ||  ||||||| ||||||||||||||||||||||||   | |||||| || ||||| || || |||||||||||||||    
T  10769489 gaccggtgcagaaaaaacatgcaacagatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttg 10769407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 118 - 355
Target Start/End: Complemental strand, 2034915 - 2034681
Alignment:
Q  118 tcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttagga 217  Q
    |||||| |||||||||  ||| |||||||||||||||| |||||||  |  ||||||    ||||||||||||| ||| || |||||| |||||||||||    
T  2034915 tcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttttttcaaagtaa---gctacataatcagaaaccgttgtttctctgtatttagga 2034819  T
Q  218 ggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagcatgcaacagatattcttggaccat 317  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||   |||  || ||  ||||||||||||| |||||||||||||| |||     
T  2034818 ggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctaatacctgtgcagaaaaagcatgccacagatattcttgggccaa 2034719  T
Q  318 tgtcatttgccagtactctatgttcaacactcttgaat 355  Q
      |||||||| | |||||| ||||||||||||||||||    
T  2034718 cttcatttgcaactactctgtgttcaacactcttgaat 2034681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 118 - 355
Target Start/End: Complemental strand, 2038993 - 2038759
Alignment:
Q  118 tcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagcaacagtagtttctttgtatttagga 217  Q
    |||||| |||||||||  ||| |||||||||||||||| ||||||| ||  ||   |||| |||| ||| |||||||| || |||||| |||||||||||    
T  2038993 tcaaatcttgtaatgtgtaagagcagaagtaccatctaatcctttttctacaa---agtacgctagatagtcagcaactgtggtttctctgtatttagga 2038897  T
Q  218 ggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagcatgcaacagatattcttggaccat 317  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||    | | || || |||||||||||||| ||||||||||  ||||||     
T  2038896 ggattgtcttctgataatagatcctttattggtccatagagctttgaggatgaccaatgacctgtggagaaaaagcatgctacagatattcgcggaccaa 2038797  T
Q  318 tgtcatttgccagtactctatgttcaacactcttgaat 355  Q
    | | ||| || |||||||| ||||||||||||||||||    
T  2038796 ttttattcgcaagtactctgtgttcaacactcttgaat 2038759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 93 - 355
Target Start/End: Complemental strand, 2048261 - 2048002
Alignment:
Q  93 tgttttttctaccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgctcgaaagtagtaggctacataatcagc 192  Q
    |||||||||| ||||||||  ||||||||||  ||||||||  ||| |||||||||||||| | |||||||  |  |||||||   | |||||| || ||    
T  2048261 tgttttttcttccacattgtccagttcaaatcctgtaatgtgtaagagcagaagtaccatccaatcctttttttacaaagtag---gttacatagtctgc 2048165  T
Q  193 aacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaag 292  Q
    ||| || |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||   ||   || || |||||||||    
T  2048164 aactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttgaagatgacctattacctgtagagaaaaag 2048065  T
Q  293 catgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaat 355  Q
    | ||| |||||||||||||||||| | | |||||| |||||| | ||||||| ||||||||||    
T  2048064 cttgctacagatattcttggaccaattttatttgcaagtactttgtgttcaaaactcttgaat 2048002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 174 - 357
Target Start/End: Original strand, 28734895 - 28735078
Alignment:
Q  174 agtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgcttt 273  Q
    |||||||||||||||||||||  || |||||| | ||| | ||||| |||||||||||||||| |||  | || |||||||| ||||||     |||| |    
T  28734895 agtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccataaagcttttcatgtgctct 28734994  T
Q  274 aagtcccgttgagaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaattt 357  Q
    |||||| |    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28734995 aagtcctgccttgaaaaagcatgcaacagatattcttggaccaatgtcatttgccagtactctatgttcaacactcttgaattt 28735078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 28699396 - 28699579
Alignment:
Q  175 gtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgcttta 274  Q
    |||||||| | ||||||||||||| |||||||||||| | ||||| |||| ||||||||||| |||  | || |||||||| ||||||     |||| ||    
T  28699396 gtaggctataaaatcagcaacagtggtttctttgtatctgggagggttgttttctgataataattctgttataggtccataaagctttttatgtgctcta 28699495  T
Q  275 agtcccgttgagaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttg 358  Q
    || || |    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  28699496 agacctgccttgaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttg 28699579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 28782846 - 28782908
Alignment:
Q  172 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataa 234  Q
    ||||||||||||||| || | || |||  ||||||||||||| ||||||||||||||||||||    
T  28782846 gtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataa 28782908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 355
Target Start/End: Original strand, 28742026 - 28742209
Alignment:
Q  172 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgct 271  Q
    ||||||||||||| |||| | || ||| |||||| | ||| | ||||| |||||||||||||| | ||| || || |||||||||||||||     ||||    
T  28742026 gtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagcttttcttgtgct 28742125  T
Q  272 ttaagtcccgttgagaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaat 355  Q
     || | || |    ||||||  |||||||||||| |||||||||| |   |||||| |||||||| || |||||||||||||||    
T  28742126 ctaggacctgccctgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctgtgctcaacactcttgaat 28742209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 351
Target Start/End: Original strand, 48904799 - 48905046
Alignment:
Q  104 ccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgct-cgaaagtagtaggctacataatcagcaacagtagtt 202  Q
    |||||||||| |||||||||||||||||||  |||  ||||||||| | ||| || ||||||| |   || ||||| || |||| ||  |||  || |||    
T  48904799 ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggag-agtagactgcatagtctccaattgtggtt 48904897  T
Q  203 tctttgtatttaggaggattgtcttctgataatagttccttcattggtccatagagctttgaggatgctttaagtcccgttgagaaaaagcatgcaacag 302  Q
    ||| ||||||| |||||||||||||| |||||||||||||| || |||||||||||| ||||||||  |||| | ||  |  |||||||||||||| |||    
T  48904898 tctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcatgcagcag 48904997  T
Q  303 atattcttggaccattgtcatttgccagtactctatgttcaacactctt 351  Q
    ||||||||||||||   | |||||| | |||||| ||||||||||||||    
T  48904998 atattcttggaccaacttgatttgcaactactctgtgttcaacactctt 48905046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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