View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_56 (Length: 360)

Name: NF15962_low_56
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_56
NF15962_low_56
[»] chr7 (1 HSPs)
chr7 (15-341)||(37188356-37188683)
[»] chr4 (11 HSPs)
chr4 (18-155)||(53498908-53499045)
chr4 (26-155)||(53492603-53492732)
chr4 (223-335)||(53492400-53492512)
chr4 (223-341)||(53498708-53498826)
chr4 (223-341)||(53494722-53494840)
chr4 (23-127)||(53494978-53495082)
chr4 (21-127)||(53489331-53489437)
chr4 (226-334)||(53489552-53489660)
chr4 (223-341)||(52590456-52590574)
chr4 (223-297)||(53501875-53501949)
chr4 (15-91)||(53502110-53502186)
[»] chr2 (4 HSPs)
chr2 (221-338)||(16941461-16941578)
chr2 (221-338)||(17012126-17012243)
chr2 (21-124)||(16942130-16942233)
chr2 (21-124)||(17012795-17012898)
[»] chr8 (4 HSPs)
chr8 (235-302)||(35016366-35016433)
chr8 (15-124)||(35017724-35017833)
chr8 (225-288)||(42990787-42990850)
chr8 (18-121)||(42991060-42991163)
[»] chr3 (4 HSPs)
chr3 (18-124)||(38214366-38214472)
chr3 (18-124)||(38218585-38218691)
chr3 (225-332)||(38214692-38214799)
chr3 (247-332)||(38218935-38219020)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 37188683 - 37188356
Alignment:
Q  15 cataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188683 cataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagt 37188584  T
Q  115 caatttcatcccatgcaccaccttttgatgatagctgaattgattgagcataaagattccaattagataaaaatattataaagt-aaaggatgaatattt 213  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  37188583 caatttcatcccatgcaccaccttttgatgatagctgaattaattgagcataaagattccaattagttaaaaatattataaagtaaaaggatgaatattt 37188484  T
Q  214 gaatatgtgcttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttgg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37188483 gaatatgtgcttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttgg 37188384  T
Q  314 attgaaaaccagagccagaggatttgtc 341  Q
    ||||||||||||||||||||||||||||    
T  37188383 attgaaaaccagagccagaggatttgtc 37188356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 53499045 - 53498908
Alignment:
Q  18 aggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaa 117  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||    
T  53499045 aggtaaaattgttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtcaa 53498946  T
Q  118 tttcatcccatgcaccaccttttgatgatagctgaatt 155  Q
    | |||||||||||||| ||||||||||| |||||||||    
T  53498945 tctcatcccatgcacctccttttgatgacagctgaatt 53498908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 53492732 - 53492603
Alignment:
Q  26 ttgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaatttcatcc 125  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  53492732 ttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttcccaagaattcaaagtcaatttcatcc 53492633  T
Q  126 catgcaccaccttttgatgatagctgaatt 155  Q
    |||||||| ||||||||||| |||||||||    
T  53492632 catgcacctccttttgatgacagctgaatt 53492603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 53492512 - 53492400
Alignment:
Q  223 cttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaac 322  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  53492512 cttacataataggcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagc 53492413  T
Q  323 cagagccagagga 335  Q
    | || ||||||||    
T  53492412 ctgaaccagagga 53492400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 53498826 - 53498708
Alignment:
Q  223 cttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaac 322  Q
    |||||||||||||||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||||||| | ||||||||||||||||||||| |    
T  53498826 cttacataataggcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagc 53498727  T
Q  323 cagagccagaggatttgtc 341  Q
    | || ||||||| ||||||    
T  53498726 ctgaaccagaggctttgtc 53498708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 53494840 - 53494722
Alignment:
Q  223 cttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaac 322  Q
    |||||||| || |||||||| || || |||||||| ||||| ||||| || |||||||||||||| |||||||| || |||||||| ||||||||||| |    
T  53494840 cttacatagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaatgttgccaaagagatattcattcttggattgaaatc 53494741  T
Q  323 cagagccagaggatttgtc 341  Q
    |||| ||||||| ||||||    
T  53494740 cagaaccagaggctttgtc 53494722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 53495082 - 53494978
Alignment:
Q  23 gaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaatttca 122  Q
    ||||||||| ||||| || ||||||||||| | ||||||||||||||||||| ||||||| || |||||||  || || ||||||||||||||||| |||    
T  53495082 gaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctccactcacattccctaagaattcaaagtcaatctca 53494983  T
Q  123 tccca 127  Q
    |||||    
T  53494982 tccca 53494978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 53489331 - 53489437
Alignment:
Q  21 tagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaattt 120  Q
    |||||||||||||||||||  ||||| |||||| |  ||||||| || ||||  ||||| || ||||||||||| |||||||||||||||||||| ||||    
T  53489331 tagaattgttgctctctgtcccctttgccttgggtgtacacatttgtatgaactatgtaaggatcaccactcaaatttcccaagaattcaaagtctattt 53489430  T
Q  121 catccca 127  Q
    |||||||    
T  53489431 catccca 53489437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 226 - 334
Target Start/End: Original strand, 53489552 - 53489660
Alignment:
Q  226 acataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaaccag 325  Q
    |||||||| |||||||| |||||||| || || ||||||||||||||||  ||||| ||||| || ||| |||| |||| ||| ||||||||||| ||||    
T  53489552 acataataagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccag 53489651  T
Q  326 agccagagg 334  Q
    |||||||||    
T  53489652 agccagagg 53489660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 52590574 - 52590456
Alignment:
Q  223 cttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaac 322  Q
    ||||||||||| |  ||||| |||||||||||||| || || ||||| || || ||||| |||||||| ||||| | ||| |||||||||||  |||| |    
T  52590574 cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatc 52590475  T
Q  323 cagagccagaggatttgtc 341  Q
    |||||||||| | ||||||    
T  52590474 cagagccagatgctttgtc 52590456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 53501949 - 53501875
Alignment:
Q  223 cttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaa 297  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || ||||||||||| || ||||||    
T  53501949 cttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaatcttcccaaaa 53501875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 53502186 - 53502110
Alignment:
Q  15 cataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccact 91  Q
    ||||| ||||||||||| || ||||| ||||| ||||| || || ||||| |||||||| |||||||| ||||||||    
T  53502186 catagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccact 53502110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 16941578 - 16941461
Alignment:
Q  221 tgcttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaa 320  Q
    |||||||||||||||| |||||  ||||||||||||| ||||  |||||||| || ||||| |||||||| ||||| | ||| |||| ||||||  ||||    
T  16941578 tgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaa 16941479  T
Q  321 accagagccagaggattt 338  Q
     ||||||||||| |||||    
T  16941478 gccagagccagaagattt 16941461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 17012243 - 17012126
Alignment:
Q  221 tgcttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaa 320  Q
    |||||||||||||||| |||||  ||||||||||||| ||||  |||||||| || ||||| |||||||| ||||| | ||| |||| ||||||  ||||    
T  17012243 tgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaa 17012144  T
Q  321 accagagccagaggattt 338  Q
     ||||||||||| |||||    
T  17012143 gccagagccagaagattt 17012126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 16942233 - 16942130
Alignment:
Q  21 tagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaattt 120  Q
    ||||||||||||||||| || ||||| |||||  | || || || || |||||||| || || |||||||||||||| || |  ||||||||||| ||||    
T  16942233 tagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaattcaaagtctattt 16942134  T
Q  121 catc 124  Q
    ||||    
T  16942133 catc 16942130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 17012898 - 17012795
Alignment:
Q  21 tagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaattt 120  Q
    ||||||||||||||||| || ||||| |||||  | || || || || |||||||| || || |||||||||||||| || |  ||||||||||| ||||    
T  17012898 tagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcaccactcaagttaccaagaaattcaaagtctattt 17012799  T
Q  121 catc 124  Q
    ||||    
T  17012798 catc 17012795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 35016433 - 35016366
Alignment:
Q  235 gcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggta 302  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||||| | ||||| |||||    
T  35016433 gcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggta 35016366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 35017833 - 35017724
Alignment:
Q  15 cataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagt 114  Q
    ||||||||||||||||| ||||| |||||||| |||||  | || |  || ||||||||||| || |||||||||||   |||||||||||| ||||| |    
T  35017833 cataggtagaattgttgttctctattacctttaccttgagtgaagatgtttgtgtgaagaatataagggtcaccacttgtgtttcccaagaactcaaaat 35017734  T
Q  115 caatttcatc 124  Q
    |||| |||||    
T  35017733 caatctcatc 35017724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 42990850 - 42990787
Alignment:
Q  225 tacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaatt 288  Q
    |||||| || ||||||||||| ||||||||||| |||| ||| ||||| || ||||||||||||    
T  42990850 tacatagtaagcagtgacggttccagcagagtttccagcaaccagtttgagttgcatatcaatt 42990787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 42991163 - 42991060
Alignment:
Q  18 aggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaa 117  Q
    |||||||||||||| |||||||| ||||| |||||   |||||| || ||||| |||||||| || | ||| || |  ||||||||||| ||||| ||||    
T  42991163 aggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggattaccgctaacatttcccaagaactcaaaatcaa 42991064  T
Q  118 tttc 121  Q
    ||||    
T  42991063 tttc 42991060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 38214366 - 38214472
Alignment:
Q  18 aggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaa 117  Q
    |||||||||||||| |||||||| ||||| |||||   |||||| || ||||| |||||||| || || ||||| |  ||||| ||||| ||||| ||||    
T  38214366 aggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaa 38214465  T
Q  118 tttcatc 124  Q
    |||||||    
T  38214466 tttcatc 38214472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 38218585 - 38218691
Alignment:
Q  18 aggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaattcaaagtcaa 117  Q
    |||||||||||||| |||||||| ||||| |||||   |||||| || ||||| |||||||| || || ||||| |  ||||| ||||| ||||| ||||    
T  38218585 aggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaa 38218684  T
Q  118 tttcatc 124  Q
    |||||||    
T  38218685 tttcatc 38218691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 38214692 - 38214799
Alignment:
Q  225 tacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaacca 324  Q
    |||||| || ||||| || || |||||||| || |||| |||||||||||| |||||||||||| | ||||| |  || || || |||||||| || |||    
T  38214692 tacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagcca 38214791  T
Q  325 gagccaga 332  Q
    ||||||||    
T  38214792 gagccaga 38214799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 38218935 - 38219020
Alignment:
Q  247 ccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaaccagagccaga 332  Q
    |||||||| || |||| |||||||||||| |||||||||||| | ||||| |  || || || |||||||| || |||||||||||    
T  38218935 ccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagccagagccaga 38219020  T

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