View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_57 (Length: 357)
Name: NF15962_low_57
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 25092003 - 25091660
Alignment:
| Q |
7 |
tggaaaagtatcagaattcaacaatgtttggttcaaggatccaattgttgaataagggagctctgtcatagggatgaaggaggaagttgacatagaagac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25092003 |
tggaaaagtatcagaattcaacaatgtttggttcaaggatccaattgttgaataagggagctctgtcatagggatgaaggaggaagttgacatagaagac |
25091904 |
T |
|
| Q |
107 |
tgtaatagaggtggtggagttggaggataagagaatggaatttgtaggggggaaaaactctgagaaagtctaggactttttgttgggggaaatggtaata |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25091903 |
tgtaatagaggtggtggagttggaggataagagaatggcatttgtaggggggaagaactctgagaaagtctaggactttttgttgggggaaatggtaata |
25091804 |
T |
|
| Q |
207 |
gaggcggtggaattggaggataagaatgtggcatttgtaggggggaagaactttgagaaggtataggataaatatcaacctgccaaggattgacgcggtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25091803 |
gaggcggtggaattggaggataagaatgtggcatttgtaggggggaagaactttgagaaggtataggataaatatcaacttgccaaggattgacgcggtt |
25091704 |
T |
|
| Q |
307 |
tggattctgcgagatatcgggaccatcccagttaacctatgata |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25091703 |
tggattctgcgagatatcgggaccatcccagttaacctatgata |
25091660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 25149973 - 25149630
Alignment:
| Q |
7 |
tggaaaagtatcagaattcaacaatgtttggttcaaggatccaattgttgaataagggagctctgtcatagggatgaaggaggaagttgacatagaagac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25149973 |
tggaaaagtatcagaattcaacaatgtttggttcaaggatccaattgttgaataagggagctctgtcatagggatgaaggaggaagttgacatagaagac |
25149874 |
T |
|
| Q |
107 |
tgtaatagaggtggtggagttggaggataagagaatggaatttgtaggggggaaaaactctgagaaagtctaggactttttgttgggggaaatggtaata |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25149873 |
tgtaatagaggtggtggagttggaggataagagaatggcatttgtaggggggaagaactctgagaaagtctaggactttttgttgggggaaatggtaata |
25149774 |
T |
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| Q |
207 |
gaggcggtggaattggaggataagaatgtggcatttgtaggggggaagaactttgagaaggtataggataaatatcaacctgccaaggattgacgcggtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25149773 |
gaggcggtggaattggaggataagaatgtggcatttgtaggggggaagaactttgagaaggtataggataaatatcaacttgccaaggattgacgcggtt |
25149674 |
T |
|
| Q |
307 |
tggattctgcgagatatcgggaccatcccagttaacctatgata |
350 |
Q |
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|
| T |
25149673 |
tggattctgcgagatatcgggaccatcccagttaacctatgata |
25149630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 25226189 - 25226120
Alignment:
| Q |
281 |
tcaacctgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctatgata |
350 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||||||||||||| |
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| T |
25226189 |
tcaacctgccaaggattgactaggtttggaatctgcgggatatcaagtccatcccagttaacctatgata |
25226120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 25290345 - 25290276
Alignment:
| Q |
281 |
tcaacctgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctatgata |
350 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||| |||||| | |||||||||||||||||||||| |
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| T |
25290345 |
tcaacctgccaaggattgactaggtttggaatctgcgggatatcaagtccatcccagttaacctatgata |
25290276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 25726980 - 25727049
Alignment:
| Q |
281 |
tcaacctgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctatgata |
350 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||| | |||||||| ||||||||||||| |
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| T |
25726980 |
tcaacctgccaaggattgactaggtttggattctgcgggatatcaagtccatcccaattaacctatgata |
25727049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 26096603 - 26096668
Alignment:
| Q |
281 |
tcaacctgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctat |
346 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || || || ||||||| ||||||||| |
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| T |
26096603 |
tcaacctgccaaggattgacacggtttggattctgcgaaatttcaggttcatcccacttaacctat |
26096668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 25220917 - 25220966
Alignment:
| Q |
10 |
aaaagtatcagaattcaacaatgtttggttcaaggatccaattgttgaat |
59 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||| |||||||||| |
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| T |
25220917 |
aaaagtgtcagaatccaaccatgtttggttcaaggatcccattgttgaat |
25220966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 25285072 - 25285121
Alignment:
| Q |
10 |
aaaagtatcagaattcaacaatgtttggttcaaggatccaattgttgaat |
59 |
Q |
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|||||| ||||||| |||| ||||||||||||||||||| |||||||||| |
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| T |
25285072 |
aaaagtgtcagaatccaaccatgtttggttcaaggatcccattgttgaat |
25285121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 25459500 - 25459435
Alignment:
| Q |
21 |
aattcaacaatgtttggttcaaggatccaattgttgaataagggagctctgtcatagggatgaagg |
86 |
Q |
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|
||||||| |||||||||||||| ||| | ||||||||||| ||| |||| ||||||||||||||| |
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| T |
25459500 |
aattcaagaatgtttggttcaaagattcctttgttgaataatggaactctatcatagggatgaagg |
25459435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 26096448 - 26096488
Alignment:
| Q |
8 |
ggaaaagtatcagaattcaacaatgtttggttcaaggatcc |
48 |
Q |
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|||||||||||| | |||||||||||||||||||||||||| |
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| T |
26096448 |
ggaaaagtatcacagttcaacaatgtttggttcaaggatcc |
26096488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 25442638 - 25442707
Alignment:
| Q |
281 |
tcaacctgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctatgata |
350 |
Q |
| |
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||||| ||||||||||||||||||||| |||| ||| | || || | ||||||||||||||||||||| |
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| T |
25442638 |
tcaacttgccaaggattgacgcggttttgattttgcaaaatttcaagttcatcccagttaacctatgata |
25442707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 25619542 - 25619475
Alignment:
| Q |
283 |
aacctgccaaggattgacgcggtttggattctgcgagatatcgggaccatcccagttaacctatgata |
350 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| || | ||| | |||||||| ||||||||||||| |
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| T |
25619542 |
aacctgccaaggattgacatggttttgattctgcaagttttcgtgtccatcccaattaacctatgata |
25619475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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