View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_58 (Length: 356)
Name: NF15962_low_58
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_58 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 51 - 356
Target Start/End: Complemental strand, 10599089 - 10598781
Alignment:
| Q |
51 |
tattgactacttactgatcacgatcacttt-cttttccttaaccgatctctaaattat--ttatagcaataaaactaacattcatttattcataccacaa |
147 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10599089 |
tattgactacttactgatcacgatcactttactattccttaaccgttctctaaattatatttatagcaataaaactaacattcatttattcataccacaa |
10598990 |
T |
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| Q |
148 |
atattacaattatacatcattatcaatacaacaagactcataccatgccgccattacatacaaaatccacattcacatgattactcagaagagtttgaac |
247 |
Q |
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| T |
10598989 |
atattacaattatacatcattatcaatacaacaagactcataccatgccgccattacatacaaaatccacattcacatgattactcagaagagtttgaac |
10598890 |
T |
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| Q |
248 |
aagacattgaccaagacattttgggagttactggtttatgtctctttgtcctcactttcttactccttttagttttggctagtttcttctccaaatcttt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598889 |
aagacattgaccaagacattttgggagttactggtttatgtctctttgtcctcactttcttactccttttagttttggctagtttcttctccaaatcttt |
10598790 |
T |
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| Q |
348 |
tactctccc |
356 |
Q |
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||||||||| |
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| T |
10598789 |
tactctccc |
10598781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 10599148 - 10599109
Alignment:
| Q |
12 |
agagatgcaaaagacctaatcatttgcaattcctatttgt |
51 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10599148 |
agagatgcaaaagacctaatcatttgcaattcctatttgt |
10599109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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