View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_60 (Length: 349)
Name: NF15962_low_60
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 11639386 - 11639556
Alignment:
| Q |
15 |
atgaaagaaaataatgagatatgctatatggcatatgacacaagaatgctagatcaacatgcaatttacctcataaaaagaaaatcaaagactgtaaagg |
114 |
Q |
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| T |
11639386 |
atgaaagaaaataatgagatatgctatatggcatatgacacaagaatgctagatcaacatgcaatttacctcataaaaagaaaatcaaagactgtaaagg |
11639485 |
T |
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| Q |
115 |
tcaaaacccaaaactctaaagcagtaatagttactggaagacaaatatgagacaagacaaaaaaattatca |
185 |
Q |
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| T |
11639486 |
tcaaaacccaaaactctaaagcagtactagttactggaagacaaatatgagacaagacaaaaaaattatca |
11639556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 11639572 - 11639682
Alignment:
| Q |
220 |
aagtcatatactatggtaatataatggtagttgacaatttcctcgaaaggcatgcaaatagtttatataagcacaccagcaaagcaagaaaaggaatcta |
319 |
Q |
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| T |
11639572 |
aagtcatatactatggtaatataatggtagttgacaatttcctcgaaaggcatgcaaatagtttatataagcacaccagcaaagcaagaaaaggaatata |
11639671 |
T |
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| Q |
320 |
caaatcttatc |
330 |
Q |
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| T |
11639672 |
caaatcttatc |
11639682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 11621039 - 11621126
Alignment:
| Q |
238 |
atataatggtagttgacaatttcctcgaaaggcatgcaaatagtttatataagcacaccagcaaagcaagaaaaggaatctacaaatct |
326 |
Q |
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| T |
11621039 |
atataatgatggttgacaatttccttggaagacatgcaa-tagtttatataagcacaccagcagatcaagaaaaagaatccataaatct |
11621126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 11638852 - 11638896
Alignment:
| Q |
231 |
tatggtaatataatggtagttgacaatttcctcgaaaggcatgca |
275 |
Q |
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| T |
11638852 |
tatgataatataatggtagttgacaatttccttgaaaggcatgca |
11638896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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