View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_62 (Length: 345)
Name: NF15962_low_62
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 23269908 - 23269596
Alignment:
| Q |
18 |
gaatactatccccattgcttcgaataagatctttagtataagaatagttaccaccacaatcacttctacctggtttaaacttgatgagatacacaaaagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23269908 |
gaatactatccccattgcttcgaataagatctttagtataagaatagttaccaccacagtcacttctacctggtttaaacttgatgagatacacaaaagt |
23269809 |
T |
|
| Q |
118 |
ttgtttttgccaagacaatgcagcaagaaacaaaggactttctccattattgttatcaatgtcaatcaaatcctttctttcaccaccttctcctatgata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23269808 |
ttgtttttgccaagacaatgcagcaagaaacaaaggactttctccattattgttatcaatgtcaatcaaatcctttctttcaccaccttctcctatgata |
23269709 |
T |
|
| Q |
218 |
cattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttcattcttacatgtaagggccttcttctcatttttgtgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23269708 |
cattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttcattcttacatgtaagggcctccttctcatttttgtgac |
23269609 |
T |
|
| Q |
318 |
ataagattgaatt |
330 |
Q |
| |
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||||||||||||| |
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| T |
23269608 |
ataagattgaatt |
23269596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 20143284 - 20143593
Alignment:
| Q |
18 |
gaatactatccccattgcttcgaataagatctttagtataagaatagttaccaccacaatcacttctacctggtttaaacttgatgagatacacaaaagt |
117 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20143284 |
gaatactatccccattgtttcgaataagatcttta---taagaatagttaccaccacaatcacttctacctggtttaaacttgatgagatacacaaaagt |
20143380 |
T |
|
| Q |
118 |
ttgtttttgccaagacaatgcagcaagaaacaaaggactttctccattattgttatcaatgtcaatcaaatcctttctttcaccaccttctcctatgata |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20143381 |
ttgtttttgccaagacaatgcagcaagaaataaaggactttcaccattattgttatcaatgtcaatcaaatcctttctttcaccacattctcctatgata |
20143480 |
T |
|
| Q |
218 |
cattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttcattcttacatgtaagggccttcttctcatttttgtgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
20143481 |
cattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttcattcttacatttaagggcctccttctcatttttgtgac |
20143580 |
T |
|
| Q |
318 |
ataagattgaatt |
330 |
Q |
| |
|
||||||||||||| |
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| T |
20143581 |
ataagattgaatt |
20143593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 28982576 - 28982630
Alignment:
| Q |
117 |
tttgtttttgccaagacaatgcagcaagaaacaaaggactttctccattattgtt |
171 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
28982576 |
tttgtttttgccaagacattgcagcaagaaacaaaggactttctccattattgtt |
28982630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 19896521 - 19896417
Alignment:
| Q |
181 |
aatcaaatcctttctttcaccaccttctcctatgatacattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttca |
280 |
Q |
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|||||||| ||| ||||||||| || ||| |||||||||||||| ||| | |||||||||| ||||||||||||| | |||||| |||||||||||| |
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| T |
19896521 |
aatcaaatgcttcctttcaccattttttccaatgatacattcacacatacttgtgaatcctctatatgctgcaaggtgaagaggagtatcacctttttca |
19896422 |
T |
|
| Q |
281 |
ttctt |
285 |
Q |
| |
|
|||| |
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|
| T |
19896421 |
gtctt |
19896417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 20089441 - 20089545
Alignment:
| Q |
181 |
aatcaaatcctttctttcaccaccttctcctatgatacattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttca |
280 |
Q |
| |
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|||||||| ||| ||||||||| || ||| |||||||||||||| ||| |||||||||||| |||||||||| || | |||||| |||||| ||||| |
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| T |
20089441 |
aatcaaatgcttcctttcaccattttttccaatgatacattcacacatacttttgaatcctctatatgctgcaagatgaagaggagtatcacctctttca |
20089540 |
T |
|
| Q |
281 |
ttctt |
285 |
Q |
| |
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|||| |
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| T |
20089541 |
gtctt |
20089545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 285
Target Start/End: Original strand, 20123297 - 20123401
Alignment:
| Q |
181 |
aatcaaatcctttctttcaccaccttctcctatgatacattcacatatatctttgaatcctcttgatgctgcaaggtgcaaaggagtgtcacctttttca |
280 |
Q |
| |
|
|||||||| ||| ||||||||| || ||| |||||||||| ||| ||| |||||||||||| ||||||||||||| | |||||| |||||| ||||| |
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| T |
20123297 |
aatcaaatgcttcctttcaccatattttccaatgatacattgacacatacttttgaatcctctatatgctgcaaggtgaagaggagtatcacctctttca |
20123396 |
T |
|
| Q |
281 |
ttctt |
285 |
Q |
| |
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|||| |
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|
| T |
20123397 |
gtctt |
20123401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 28982087 - 28982121
Alignment:
| Q |
18 |
gaatactatccccattgcttcgaataagatcttta |
52 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
28982087 |
gaatactatcccaattgcttcgaataagatcttta |
28982121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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