View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_low_63 (Length: 341)
Name: NF15962_low_63
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 10586665 - 10586973
Alignment:
| Q |
19 |
gtttgcacattaagttgctcatcatggtaagttgctcatcatgcctacctatgattgagctatcatccagttatttcatctaagtttcttttattagtat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10586665 |
gtttgcacattaagttgctcatcatggtaagttgctcatcatgcctacctatgattgagctatcatccagttatttcatctaagtttcttttattagtat |
10586764 |
T |
|
| Q |
119 |
atttgggttgattcctcatttttccttaaagttccaaggactggtgtgaagaggctaaag-nnnnnnnnttcatgcacagccattaatcaaagtaaattt |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10586765 |
attcgggttgattcctcatttttccttaaagttccaaggactggtgtgaagaggctaaagaaaaaaaaattcatgcacagccattaatcaaagtaaattt |
10586864 |
T |
|
| Q |
218 |
gcatcttcaaataaatttctgaaaataaagaaatggttcaaaactgcagtacctcttggctctaaatgataactgatcagacatagctgcaagagcctgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10586865 |
gcatcttcaaataaatttctgaaaataaagaaatggttcaaaactgcagtacctcttggctctaaatgataactgatcagacatagctgcaagagcctgc |
10586964 |
T |
|
| Q |
318 |
atagtataa |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
10586965 |
atagtataa |
10586973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University