View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_64 (Length: 340)

Name: NF15962_low_64
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_64
NF15962_low_64
[»] chr1 (2 HSPs)
chr1 (17-322)||(7100578-7100868)
chr1 (17-322)||(7580372-7580668)
[»] chr5 (16 HSPs)
chr5 (17-320)||(17984043-17984352)
chr5 (27-322)||(29854468-29854763)
chr5 (27-322)||(30476532-30476827)
chr5 (11-322)||(30520263-30520574)
chr5 (11-322)||(30560603-30560914)
chr5 (46-168)||(30401388-30401510)
chr5 (46-154)||(30207847-30207955)
chr5 (27-322)||(29873331-29873626)
chr5 (28-154)||(30329496-30329622)
chr5 (287-322)||(17417507-17417542)
chr5 (60-167)||(30675975-30676082)
chr5 (27-100)||(30241047-30241120)
chr5 (46-168)||(17417341-17417463)
chr5 (136-172)||(30061679-30061715)
chr5 (136-172)||(30484708-30484744)
chr5 (136-172)||(30750953-30750989)
[»] chr4 (3 HSPs)
chr4 (27-172)||(52353268-52353413)
chr4 (94-190)||(13617891-13617987)
chr4 (17-78)||(13617991-13618052)
[»] chr3 (1 HSPs)
chr3 (27-180)||(25292601-25292754)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 7100868 - 7100578
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||        
T  7100868 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgaatgttccatcaa---- 7100773  T
Q  117 gctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcata 216  Q
               ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7100772 -----------gggcttatcctctttcaaaccaaagaatgtcatgtttcgccattacataggcagtaggttgaatgaaattactagcagactcagtcata 7100684  T
Q  217 ttgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgc 316  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100683 ttgccgaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgc 7100584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 7580372 - 7580668
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatcc 116  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||  |||||||||    
T  7580372 gaagcaattaactgaccgatctattcaaatatggttgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaaatcc 7580471  T
Q  117 gctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcata 216  Q
      |||||| |||||         |||||||| |||||| ||||||||||| | |||  |||||| ||||||||| || ||| | ||||||||||  || |    
T  7580472 agtcgactcaaggg---------tttcaaactaaagaacgtcatgtttcgacgtgatttaggcactaggttgaaagagattgcaagcagactcaaccaaa 7580562  T
Q  217 ttgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgc 316  Q
    |||| |||  |||||| || ||| |  ||||||||||| ||  ||||||  || |||||| |||||||||||| |||||||||||||||||| |||||||    
T  7580563 ttgctgaaaataagaacaagtttcttttacgagaaggtattgttgttacagaaaaaccaattgaagtggctgactggcgccaaaccagctccattattgc 7580662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 17984352 - 17984043
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatcc 116  Q
    |||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||| |||||||||    
T  17984352 gaagcatttgacagatcgttctattcaaatatggctgcagcaactcaaagatgcggtgtttgtgcttgatgatatcctagatgaatgttcgatcaaatcc 17984253  T
Q  117 gctcgacttaagggcttatcctctttca---aaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtc 213  Q
     ||| | ||||| | | |||||||||||   | ||||||||  |||||||||||| ||||||||||||||||||||| || ||| | || ||||||  |     
T  17984252 actcaatttaagagttcatcctctttcatcaatccaaagaacttcatgtttcgccgtgacataggcagtaggttgaaagagattgcaagtagactcgatt 17984153  T
Q  214 atattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaaca---accaactgaagtggctgaatggcgccaaaccagctcctt 310  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |   ||||| |||||||||||||||||||||||||||| || |    
T  17984152 atattgctgaaggtaagaagaattttatgctacgagaaggtattactgttacggaaaaattaccaagtgaagtggctgaatggcgccaaaccagccccgt 17984053  T
Q  311 tattgctgaa 320  Q
    ||||||||||    
T  17984052 tattgctgaa 17984043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 29854763 - 29854468
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||| ||||||| |  ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| ||||| ||||| || | || |||||    
T  29854763 acagaccactctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaagtctggtcaactta 29854664  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 226  Q
      || ||| |||||||||||||||||||  |||||||||||||||| || ||||  |||||||| || ||||| || | | |   | ||||||| ||  |    
T  29854663 gaggattaacctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgatag 29854564  T
Q  227 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    |||||| || ||| | ||||| || |||  || ||||| | ||    ||| |||||| ||||||||||| |||||||||||| |||||||||||||    
T  29854563 taagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgctgaacc 29854468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 30476827 - 30476532
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||||||||||| |  ||||||| || |||||||||||||| || ||||| ||||||||||| |||||||||||||||||  ||||   | ||||||    
T  30476827 acagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatgaatgttccattgaatctagtagactta 30476728  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 226  Q
    | | ||  |||| |||||| | ||||||  |  ||||||||| |||||| ||||  |||||||| |||||||| || ||| ||  ||| ||||| ||| |    
T  30476727 aagcctcgtcctgtttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggttgaaagaaattacaaggagattcgatcaaattgctgaaag 30476628  T
Q  227 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    |||  | || ||| |  ||||||| |||||   ||||| | ||   |||| |||||| ||||||||||||||||| |||||| |||||||||||||    
T  30476627 taaagacaagtttcttttacgagagggtgtcgttgttagggaaaggccaaatgaagttgctgaatggcgccaaacaagctccattattgctgaacc 30476532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 30520263 - 30520574
Alignment:
Q  11 tgagatgaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatc 110  Q
    ||||| ||| ||| ||||||||||||||||  |  ||||||| || ||||||||||||||| | ||  | || |||||||| |||||||| ||||||||     
T  30520263 tgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttccatt 30520362  T
Q  111 aaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactca 210  Q
     ||||| ||||||  |||||| |||| ||||| | |  ||||||| |||||||||||||| | || |||| |||||| || |||||||| | |||| ||     
T  30520363 caatccactcgacaaaagggcatatcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcg 30520462  T
Q  211 gtcatattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctt 310  Q
     | ||||||| ||| |||| || || ||| | |||| |||| ||||| |||||| | ||    |||   | |||||||||||||| ||||| |||||  |    
T  30520463 atgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctat 30520562  T
Q  311 tattgctgaacc 322  Q
    ||||||||||||    
T  30520563 tattgctgaacc 30520574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 30560603 - 30560914
Alignment:
Q  11 tgagatgaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatc 110  Q
    ||||| ||| ||| ||||||||||||||||  |  ||||||| || ||||||||||||||| | ||  | || |||||||| |||||||| ||||||||     
T  30560603 tgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatgagtgttccatt 30560702  T
Q  111 aaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactca 210  Q
     ||||| ||||||  |||||| |||| ||||| | |  ||||||| |||||||||||||| | || |||| |||||| || |||||||| | |||| ||     
T  30560703 caatccactcgacaaaagggcatatcttcttttacattaaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcg 30560802  T
Q  211 gtcatattgcagaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctt 310  Q
     | ||||||| ||| |||| || || ||| | |||| |||| ||||| |||||| | ||    |||   | |||||||||||||| ||||| |||||  |    
T  30560803 atgatattgctgaaagtaaaaacaagtttcttctacaagaatgtgttgctgttagggaaaggtcaatcaatgtggctgaatggcgtcaaactagctctat 30560902  T
Q  311 tattgctgaacc 322  Q
    ||||||||||||    
T  30560903 tattgctgaacc 30560914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 30401510 - 30401388
Alignment:
Q  46 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 145  Q
    ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| ||||| ||| | || |||||||||   |||| || |||||||||    
T  30401510 tatggctccaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgttcgatcgagtctgctcgacttggaggctcattctctttcaa 30401411  T
Q  146 accaaagaatgtcatgtttcgcc 168  Q
     ||||||||  || |||||||||    
T  30401410 cccaaagaacatcgtgtttcgcc 30401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 154
Target Start/End: Complemental strand, 30207955 - 30207847
Alignment:
Q  46 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 145  Q
    ||||||| || |||||||||||||| || ||||| || ||||||||||||||||| || || ||| | || ||||||||||  | || ||| ||||||||    
T  30207955 tatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatgagtgctcgatcgagtctgctcgacttattgcctcatcatctttcaa 30207856  T
Q  146 accaaagaa 154  Q
    |||||||||    
T  30207855 accaaagaa 30207847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 29873626 - 29873331
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||||||||||| |  ||||||| || |||||||||||||  || ||||| || ||||||||||||||||| || || ||||| || | || |||||    
T  29873626 acagaccgctctattaaggtatggctacaacaactcaaagatgttgtttatgtgctcgatgatatccttgatgagtgctcgatcaagtctggtcaactta 29873527  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaatgaaattactagcagactcagtcatattgcagaagg 226  Q
      || | |  |||||| |||||||| ||  |||||||||||| ||| || ||||  |||||||| || ||||| || ||| |   | ||||||| ||  |    
T  29873526 gaggatcaatctcttttaaaccaaataacatcatgtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatag 29873427  T
Q  227 taagaagaattttatgctacgagaaggtgttactgttacgcaacaaccaactgaagtggctgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    |||||| || ||| | ||||| || |||  || ||||| | ||    ||| |||||| ||||||||||| |||||||||||| |||||| ||||||    
T  29873426 taagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgttgaacc 29873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 30329496 - 30329622
Alignment:
Q  28 cagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaa 127  Q
    |||||||||||||| | |||||||| || ||| |||||||||   | ||||| |||||||||||||||||||| || |  ||| | || | |||| |||     
T  30329496 cagaccgctctattaagatatggcttcaacaaatcaaagatgatatatatgtgcttgatgatatccttgatgagtgcttgatcgagtctggtcgaattag 30329595  T
Q  128 gggcttatcctctttcaaaccaaagaa 154  Q
     |||| |||||||||||||||||||||    
T  30329596 aggctcatcctctttcaaaccaaagaa 30329622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 17417507 - 17417542
Alignment:
Q  287 tgaatggcgccaaaccagctcctttattgctgaacc 322  Q
    ||||||||||||||||||||||||||||||||||||    
T  17417507 tgaatggcgccaaaccagctcctttattgctgaacc 17417542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 30675975 - 30676082
Alignment:
Q  60 ctcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtca 159  Q
    ||||||||||| || ||||| || ||||||||||||||||| | ||| ||||| || | || |||||  || | ||||||| |||||||||||||  |||    
T  30675975 ctcaaagatgctgtttatgtgctcgatgatatccttgatgagtattcaatcaagtctggtcaacttagaggatcatcctctctcaaaccaaagaacatca 30676074  T
Q  160 tgtttcgc 167  Q
    ||||||||    
T  30676075 tgtttcgc 30676082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 30241047 - 30241120
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatga 100  Q
    |||||| |||||||| |  |||||||||| |||||||||||||  || ||||| || |||||||||||||||||    
T  30241047 acagactgctctattaaggtatggctgcaacaactcaaagatgttgtttatgtgctcgatgatatccttgatga 30241120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 17417341 - 17417463
Alignment:
Q  46 tatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaa 145  Q
    ||||||| || |||||||||||||  || ||||| || |||||||| |||||||| || || ||| | || | ||| ||||  |||| ||||| ||||||    
T  17417341 tatggcttcaacaactcaaagatgttgtttatgtgctagatgatattcttgatgagtgctcaatcgagtctggtcggcttagaggctcatcctatttcaa 17417440  T
Q  146 accaaagaatgtcatgtttcgcc 168  Q
    |||||||||  |||| |||||||    
T  17417441 accaaagaacatcatatttcgcc 17417463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30061715 - 30061679
Alignment:
Q  136 cctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30061715 cctctttcaaaccaaagaacatcatgtttcgccatga 30061679  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30484744 - 30484708
Alignment:
Q  136 cctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30484744 cctctttcaaaccaaagaacatcatgtttcgccatga 30484708  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 30750989 - 30750953
Alignment:
Q  136 cctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
    |||||||||||||||||||  ||||||||||||||||    
T  30750989 cctctttcaaaccaaagaacatcatgtttcgccatga 30750953  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 52353413 - 52353268
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||||   ||||||||    
T  52353413 acagaccgctctattaaagtatggcttcagcaactcaaagatgctgtttacgttctcgatgatatccttgatgaatgttcgatcaaatctagtcgactta 52353314  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatga 172  Q
     ||| ||||| || ||||||||||| ||| |  ||||||| |||||    
T  52353313 tgggtttatcgtcattcaaaccaaaaaatattgtgtttcgtcatga 52353268  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 13617987 - 13617891
Alignment:
Q  94 ttgatgaatgttccatcaaatccgctcgacttaagggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggcagtaggttgaa 190  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||| |  ||| || |  |||||||||||| |||||||||||    
T  13617987 ttgatgaatgttccatcaaatccactcgacttaagggcttgtccactttcaaactaaaggacatcaagtatttccatgacataggaagtaggttgaa 13617891  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 13618052 - 13617991
Alignment:
Q  17 gaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatg 78  Q
    ||||||||||| || | |||||||| |||||||||| || |||||| |||||||| ||||||    
T  13618052 gaagcaattaagagtctgctctattaaaatatggctccaacaactcgaagatgcaatgtatg 13617991  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 25292601 - 25292754
Alignment:
Q  27 acagaccgctctattcaaatatggctgcagcaactcaaagatgcagtgtatgttcttgatgatatccttgatgaatgttccatcaaatccgctcgactta 126  Q
    ||||| ||||||||| |  ||||||| || |||||||||||||  || ||||| || ||||||||||||||||| || |  ||||||||   ||||||||    
T  25292601 acagatcgctctattaaggtatggctacaacaactcaaagatgttgtatatgtgctcgatgatatccttgatgagtgattgatcaaatctagtcgactta 25292700  T
Q  127 agggcttatcctctttcaaaccaaagaatgtcatgtttcgccatgacataggca 180  Q
      |||| |||||||||||||||||||||  ||||||||| |||| |||| ||||    
T  25292701 gaggctcatcctctttcaaaccaaagaacatcatgtttcaccattacattggca 25292754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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