View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_65 (Length: 340)
Name: NF15962_low_65
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 3535862 - 3535534
Alignment:
| Q |
1 |
tatatgaacaaggccctatgcttcgtattaattcaacagagtttgctaaagcacgagtttgtatggtactgaattttccaatctagaaacatcaactcat |
100 |
Q |
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| T |
3535862 |
tatatgaacaaggccctatgcttcgtattaattcaacagagtttgctaaagcacgagtttgtatggtactgaattttctaatctagaaacatcaactcat |
3535763 |
T |
|
| Q |
101 |
acaagtcaacttgcgagatcgataaccatgatgaagagaggagataaagaggccctaatagagcactactatactccaacccttgatattgcaaccaaat |
200 |
Q |
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| T |
3535762 |
acaagtcaacttgcgagatcgataaccatgatgaagagaggagataaagaggccctaatagagcactactatactccaacccttgatattgcaaccaaat |
3535663 |
T |
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| Q |
201 |
gcagccgatgcagttaacattatcattgtgatgccagtgcagtcctgcagagagctctaaaactcttctgttatggctgcagttgcgaaccacaatttaa |
300 |
Q |
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| T |
3535662 |
gcagccgatgcagttaacatcatcattgtgatgccagtgcagtcctgcagagagctccaaaactcttctattatggctgcagttgcgaaccacaatttaa |
3535563 |
T |
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| Q |
301 |
aactcctacctaaaacatttttaattcat |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3535562 |
aactcctacctaaaacatttttaattcat |
3535534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 3481129 - 3481195
Alignment:
| Q |
72 |
aattttccaatctagaaacatcaactcatacaagtcaacttgcgagatcgataaccatgatgaagag |
138 |
Q |
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|||||| |||||||||||||| ||||||| || ||||||||| ||| | |||||||||||||||||| |
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| T |
3481129 |
aatttttcaatctagaaacattaactcatccacgtcaacttgtgagttagataaccatgatgaagag |
3481195 |
T |
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