View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_7 (Length: 561)
Name: NF15962_low_7
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 544
Target Start/End: Complemental strand, 103771 - 103246
Alignment:
| Q |
19 |
attcaaagattgtataaagttatatacagaaatgagatgcatcacatcaaggaaattacaacagaatcaaaaatcaactgcaaacatagtacgatatcta |
118 |
Q |
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| T |
103771 |
attcaaagattgtataaagttatatacagaaatgagattcatcacatcaaggaaattacaacagaatcaaaaatcaactgcaaacatagtacgatatcta |
103672 |
T |
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| Q |
119 |
ggcaaagactttcttcatgctcgcagcccattcaaaactgaacaagcaaagggccatgagactctaggcaaaaatcgaactatagaagatattgaaaaac |
218 |
Q |
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| T |
103671 |
ggcaaagactttcttcatgctcgcagcccattcaaaactgaacaagcaaagggccatgagactctaggcaaaaatcgaactatagaagatattgaaaaac |
103572 |
T |
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| Q |
219 |
cacaacacctgaagcctatcatctttcagggtagataatcaaacatcattatatcaaacaagccctctacgttggtgctgtcacgctcctccagcatagg |
318 |
Q |
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| T |
103571 |
cacaacacctgaagcctatcatctttcagggtagataatcaaacatcattatattaaacaagccctctacgttggtgctgtcacgctcctccagcatagg |
103472 |
T |
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| Q |
319 |
ttgtgtagaataaaccaatgatatgctcctatagaccacgatgaaatgtttgcgaggttcattctcttacgttctacttcctaatttcatgccaatattt |
418 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103471 |
ttgtgtagaataaatcaatgatatgctcctatagaccacgatgaaatgtttgcgaggttcattctcttacgttctacttcctaatttcatgccaatattt |
103372 |
T |
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| Q |
419 |
attgtacataacaactagtgagttggaagacctaggagcattagcaaccaggccccacaatagatgaccggtcctcgggattgacaactgcttcagaatc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103371 |
attgtacataacaactagtgagttggaagacctaggagcattagcaaccaggccccacaatagatgaccggtcctcgggattgacaactgcttcagaatc |
103272 |
T |
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| Q |
519 |
cagtttgcttggtttaccttcttcat |
544 |
Q |
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|||||||||||||||||||||||||| |
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| T |
103271 |
cagtttgcttggtttaccttcttcat |
103246 |
T |
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