View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_71 (Length: 334)
Name: NF15962_low_71
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 37626485 - 37626794
Alignment:
| Q |
8 |
tagcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgc |
107 |
Q |
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| T |
37626485 |
tagcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgc |
37626584 |
T |
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| Q |
108 |
aggtgactttatgctcaagattacactataatagaaaattgaattaagtgtgtattgaatggattggttgcattgtatcatcgtatcagtgaccagtgat |
207 |
Q |
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| T |
37626585 |
aggtgactttatgctcaagattacactataataaaaaattgaattaagtgtgtattgaatggattggttgcattgcatcctcgtatcagtgaccagtgat |
37626684 |
T |
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| Q |
208 |
tgtttgatcaaggtcatctgacagtatttgtgattgaaaaaataaaatttgcttgatttctacaccgtccgacctttatccacaatggtcaccaatgtgc |
307 |
Q |
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| T |
37626685 |
tgtttgatcaaggtcatctgacagtatttgagatt-taaaaattaaatttgcttgatttctacaccgtccgacctttatc--caatggtcaccaatgtgc |
37626781 |
T |
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| Q |
308 |
tgaatgtagaaat |
320 |
Q |
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||||||||||||| |
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| T |
37626782 |
tgaatgtagaaat |
37626794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 37618103 - 37618276
Alignment:
| Q |
8 |
tagcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattaacagaaatctgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
37618103 |
tagcaaaggaagtaaccaaatacctgctcttctggaattggcaaagttagactctgatatggttcagtcattacaccaaagagaattagcagaaatatgc |
37618202 |
T |
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| Q |
108 |
aggtgactttatgctcaagattacactataatagaaaattgaattaagtgtgtattgaatggattggttgcatt |
181 |
Q |
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| T |
37618203 |
aggtgactttatgctcaagattacactataataaaaaattgaattaagtgtgtattggatggattggttgcatt |
37618276 |
T |
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