View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_73 (Length: 331)
Name: NF15962_low_73
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_73 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7558880 - 7559210
Alignment:
| Q |
1 |
agagaaattgattatttattctaaaattatctatttccgaatatcttatcctcaccgtaaaacgacaaccaccacctctcaaagcacactctcaaaagct |
100 |
Q |
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| T |
7558880 |
agagaaattgattatttattctaaaattatctatttccgaatatcttatcctcactgtaaaacgacaaccaccacctctcaaagcacactctcaaaagct |
7558979 |
T |
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| Q |
101 |
ctcactctcatagcaagttctctaaccatggaagcctcaaagatgctactattctctccaatatcaacaccaaagacatttacaaaccatttaaatcacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7558980 |
ctcactctcatagcaagttctctaaccatggaagcctcaaagatgctactattctctccaatatcaacaccaaagacatttacaaaccatttaaatcacc |
7559079 |
T |
|
| Q |
201 |
cactaagaaagccaaaatctcgtcatgtgagactcaaactcaagataacaaacatggcaaaggaaggaagcgacactaacagcagcccaacagagatagc |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7559080 |
cactaagaaagccaaaatctcatcatgtgagactcaaactcaagataacaaacatggcaaaggaaggaagcgacactaacagcagcccaacagagatagc |
7559179 |
T |
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| Q |
301 |
agcaatagcaggtgggttaatctcaactcct |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7559180 |
agcaatagcaggtgggttaatctcaactcct |
7559210 |
T |
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