View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_75 (Length: 330)
Name: NF15962_low_75
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_75 |
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| [»] chr6 (12 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 23251822 - 23251493
Alignment:
| Q |
1 |
gacattgacaccgttgtagctgtcgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagaggaaatgttgaatatgccagagttgtgga |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23251822 |
gacattgacaccgttgtagctgttgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagaggaagtgttgaatatgccagagttgtgga |
23251723 |
T |
|
| Q |
101 |
ggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23251722 |
ggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatg |
23251623 |
T |
|
| Q |
201 |
gaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23251622 |
gaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctg |
23251523 |
T |
|
| Q |
301 |
catatacataggttgaatttgaaaaggaat |
330 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
23251522 |
catatacataggttgaatttgaaaaggaat |
23251493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 328
Target Start/End: Complemental strand, 23257795 - 23257469
Alignment:
| Q |
4 |
attgacaccgttgtagctgtcgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagag---gaaatgttgaatatgccagagttgtgga |
100 |
Q |
| |
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||||||||||| ||| ||||||| || ||| ||||| ||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||| || |
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| T |
23257795 |
attgacaccgtagtacctgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatgccagaattgttga |
23257696 |
T |
|
| Q |
101 |
ggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23257695 |
ggaatatggcactaatgtcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatcactatg |
23257596 |
T |
|
| Q |
201 |
gaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctg |
300 |
Q |
| |
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|||||| |||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |||| |
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| T |
23257595 |
gaacttctaaacttaatgtgtttgg-tttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctg |
23257497 |
T |
|
| Q |
301 |
catatacataggttgaatttgaaaagga |
328 |
Q |
| |
|
||||||||||||||||| |||||||||| |
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| T |
23257496 |
catatacataggttgaaattgaaaagga |
23257469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 23266352 - 23266063
Alignment:
| Q |
2 |
acattgacaccgttgtagctgtcgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaagaggaaatgttgaatatgccagagttgtggag |
101 |
Q |
| |
|
||||||| || ||||||||||| ||||| ||| ||||| ||||||||||| |||| |||| ||||||||||||||||||||||||| ||||| ||||| |
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| T |
23266352 |
acattgagactgttgtagctgttgtcgccacaaaggagttgaatatgttttgtgtggaag---aagaagaggaaatgttgaatatgccggagttttggag |
23266256 |
T |
|
| Q |
102 |
gaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatgg |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
23266255 |
gaatatggcactaatgtcccctacacatagctttgagtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatgg |
23266156 |
T |
|
| Q |
202 |
aacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaa |
295 |
Q |
| |
|
||||| ||||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
23266155 |
aacttctaaattttctttgtttggtttaac-tttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaa |
23266063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 23247395 - 23247082
Alignment:
| Q |
16 |
gtagctgtcgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaagaa---gaggaaatgttgaatatgccagagttgtggaggaatatggcac |
112 |
Q |
| |
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|||| ||||||||| ||| ||||||||||||||||| |||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23247395 |
gtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatgaacaggaggaaatgttgaatatgccagagttgtggaggaatatggcgt |
23247296 |
T |
|
| Q |
113 |
taatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaacttttaaat |
212 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23247295 |
tgatgtcacctacacatagctttgagtatcatga---gtatgacgatattcatgtacaagattttcaagatgatgaggtatcactatggaacttttaaat |
23247199 |
T |
|
| Q |
213 |
ttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacatagg |
312 |
Q |
| |
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||||| ||| |||| || ||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||| |
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| T |
23247198 |
ttaatgtcttttgttt-acttttctttttggattgtaggataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacatagg |
23247100 |
T |
|
| Q |
313 |
ttgaatttgaaaaggaat |
330 |
Q |
| |
|
|| || || ||||||||| |
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| T |
23247099 |
ttaaaattaaaaaggaat |
23247082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 23283389 - 23283160
Alignment:
| Q |
41 |
tgaatatgtttcgtgttgaagtcgaa---gaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgg |
137 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| | ||| |
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|
| T |
23283389 |
tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgtcagagatgtggaggaatatggcgttaatgtcccctacacatag-tatgg |
23283291 |
T |
|
| Q |
138 |
gtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttat |
237 |
Q |
| |
|
| |||| |||||||| || || || ||||||||||||||||||| |||||||| ||||||||||| |||| || | ||||||||| ||| | |
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|
| T |
23283290 |
--agcatg---agtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtttggttttgttttttt |
23283196 |
T |
|
| Q |
238 |
ttttggattgtagaataggaaatgtctatactacaa |
273 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |
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| T |
23283195 |
ttttggattgtagaattgaaaatgtctatactacaa |
23283160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 206
Target Start/End: Complemental strand, 23289729 - 23289570
Alignment:
| Q |
41 |
tgaatatgtttcgtgttgaagtcgaa---gaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgg |
137 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
23289729 |
tgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatgcaagagttgtggaaaaatatggcactaatgtcccctacacatagttttg- |
23289631 |
T |
|
| Q |
138 |
gtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaactt |
206 |
Q |
| |
|
| |||| ||||||||||| || || ||||| ||||||||||| |||||||| ||||||||||| |
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|
| T |
23289630 |
--agcatg---agtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaactt |
23289570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 23391174 - 23391074
Alignment:
| Q |
80 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttca |
179 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||| ||| | |||||| |||||||| | ||||||||||| |
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| T |
23391174 |
tgaacatgccagagttgttgaggaatatggcactaatgtctcctacacatagctctgggtataatg---aatatgaaaatattcatgttcaagactttca |
23391078 |
T |
|
| Q |
180 |
agat |
183 |
Q |
| |
|
|||| |
|
|
| T |
23391077 |
agat |
23391074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 23593082 - 23593015
Alignment:
| Q |
65 |
aagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagc |
132 |
Q |
| |
|
|||| |||||| ||||||| || ||||||| || |||||||||||| ||||||||||||||||||||| |
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|
| T |
23593082 |
aagaggaggaagtgttgaacattccagagtcgttgaggaatatggctctaatgtcccctacacatagc |
23593015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 23582948 - 23582820
Alignment:
| Q |
80 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttca |
179 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| |||||| ||| ||||| || ||||| || |||||||||| |
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|
| T |
23582948 |
tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatg---agtatcaatatattaat---gaagactttca |
23582855 |
T |
|
| Q |
180 |
agatgatgaggtatcactatggaacttttaaattt |
214 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||| |
|
|
| T |
23582854 |
agatgaaaaagtatcactatggagtttttaaattt |
23582820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 23586831 - 23586703
Alignment:
| Q |
80 |
tgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctttgggtatcatgatcagtatgaagatattcatatacaagactttca |
179 |
Q |
| |
|
|||| |||| |||| ||||||| |||||||| |||||||| |||||||||||||| |||||| ||| ||||| || ||||| || |||||||||| |
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| T |
23586831 |
tgaacatgcaagagatgtggagtaatatggcgctaatgtctcctacacatagcttggggtattatg---agtatcaatatattaat---gaagactttca |
23586738 |
T |
|
| Q |
180 |
agatgatgaggtatcactatggaacttttaaattt |
214 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||| |
|
|
| T |
23586737 |
agatgaaaaagtatcactatggagtttttaaattt |
23586703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 23633905 - 23633835
Alignment:
| Q |
64 |
gaagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctt |
134 |
Q |
| |
|
|||||||||||| |||||| || || |||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23633905 |
gaagaagaggaagagttgaacattcctgagtcattgaggaatatggctctaatgtcccctacacatagctt |
23633835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 23506563 - 23506493
Alignment:
| Q |
64 |
gaagaagaggaaatgttgaatatgccagagttgtggaggaatatggcactaatgtcccctacacatagctt |
134 |
Q |
| |
|
|||||||||||| |||||| || || |||| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23506563 |
gaagaagaggaagagttgaacattcctgagtcattgaggaatatggttctaatgtcccctacacatagctt |
23506493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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