View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_78 (Length: 319)
Name: NF15962_low_78
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 26839110 - 26839373
Alignment:
| Q |
18 |
gctttcatttcctcaaaattcagcaacaaacttaagcctttacctaaaacaaaaaagtgcttgtgatcttcaaaaaagggaaagactgatacctcgggtc |
117 |
Q |
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| T |
26839110 |
gctttcatttcctcaaaattcagcaacaaacttaagcctttacctaaaacaaaaaagtgcttgtgatcttcaaaaaagggaaagactgatgcctcgggtc |
26839209 |
T |
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| Q |
118 |
aatcatccagttctataacgtatgataaacctacagaagatgtcaaaagcagatatataagtatacgcatcatcttggaaaaaataatttgaccaaaatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26839210 |
aatcatccagttctataacgtatgataaacctacagaagatgtcaaaagcagatatataagtatacgcatcatcttggagaaaataatttgaccaaaatc |
26839309 |
T |
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| Q |
218 |
aaaagagtctatgccatatttacaaccaagaatattaagattttaatg-tttaagtctttcctagg |
282 |
Q |
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| T |
26839310 |
aaa--agtctatgccatatttacaaccaagaatattaagattttaatgttttaagtctttcctagg |
26839373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 26956651 - 26956821
Alignment:
| Q |
41 |
caacaaacttaagcctttacctaaaacaaaaaagtgcttgtgatcttcaaaaaagggaaa-gactgatacctcgggtcaatcatccagttctataacgta |
139 |
Q |
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|||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||| | | | | | |||| ||||||||||||||| |||||||| | |
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| T |
26956651 |
caacaaacttaagcctttacataaaacaaa---gtgctagtgatcttcacgaaagggagacgccgggtgcctcaggtcaatcatccagtactataacgaa |
26956747 |
T |
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| Q |
140 |
tgataaacctacagaagatgtcaaaagcagatatataagtatacgcatcatcttggaaaaaataatttgaccaaaat |
216 |
Q |
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| T |
26956748 |
ttgtaaatctacaga---tgtcaaaagcaaatatataagtatacgcatcaccttggagaaaagaatttgaccaaaat |
26956821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 34662775 - 34662945
Alignment:
| Q |
41 |
caacaaacttaagcctttacctaaaacaaaaaagtgcttgtgatcttcaaaaaagggaaa-gactgatacctcgggtcaatcatccagttctataacgta |
139 |
Q |
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|||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||| | | | | | |||| ||||||||||||||| ||||||| | |
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| T |
34662775 |
caacaaacttaagcctttacataaaacaaa---gtgctagtgatcttcacgaaagggagacgccgggtgcctcaggtcaatcatccagtactataacaaa |
34662871 |
T |
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| Q |
140 |
tgataaacctacagaagatgtcaaaagcagatatataagtatacgcatcatcttggaaaaaataatttgaccaaaat |
216 |
Q |
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| |||| |||| |||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||| |
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| T |
34662872 |
ttgtaaatctac---agatgtcaaaagcaaatatataagtatacgcatcaccttggagaaaagaatttgaccaaaat |
34662945 |
T |
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