View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_79 (Length: 314)
Name: NF15962_low_79
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 306
Target Start/End: Original strand, 7685050 - 7685333
Alignment:
| Q |
23 |
cacaaataaaaagagattttaagttgcagagaaaaccatatgtatgcttttattttcttttgaacttaatgacatgtttaattatgaatacttccaacta |
122 |
Q |
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| T |
7685050 |
cacaaataaaaagagattttaagttgcagagaaaaccatatgtatgcttctattttctattgaacttaatgatatgtttaattatgaatacttccaatta |
7685149 |
T |
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| Q |
123 |
aactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctttctcattaagttaacgatagccttagtatataatggcattg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
7685150 |
aactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctttctcattaagttaacgatagcctcagtatataattgcattg |
7685249 |
T |
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| Q |
223 |
acattccttcttcacaatctggatgacaaccataatttcccatgtcattcaatgtcaatgttaacgtagctccatgttcatctc |
306 |
Q |
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| T |
7685250 |
acattccttcttcacaatctggataacaaccataatttcccatgtcattcaatgtcaatgttaacgtagctccatgctcatctc |
7685333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 119 - 306
Target Start/End: Original strand, 13884452 - 13884639
Alignment:
| Q |
119 |
actaaactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctttctcattaagttaacgatagccttagtatataatggc |
218 |
Q |
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| T |
13884452 |
actaaactcagattatgaaacctgcaacttaccgtgagcaagaaatgaacccattggttgctttctcattaaattaaccatagcctcggtgtataatggc |
13884551 |
T |
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| Q |
219 |
attgacattccttcttcacaatctggatgacaaccataatttcccatgtcattcaatgtcaatgttaacgtagctccatgttcatctc |
306 |
Q |
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| T |
13884552 |
attgacattccttctgtacaatctggatgacaaccatagtttcccatgtcattcaatgtcaatgttaatgtagctccatgctcatctc |
13884639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 119 - 306
Target Start/End: Original strand, 14024577 - 14024764
Alignment:
| Q |
119 |
actaaactcagattatgaaatctgcaacttactgtgagcaagaaatgaatccattggttgctttctcattaagttaacgatagccttagtatataatggc |
218 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||||||| || ||||||||| |
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| T |
14024577 |
actaaactcagattatgaaacctgcaacttaccgtgagcaagaaatgaacccattggttgctttctcattaaattaaccatagcctcggtgtataatggc |
14024676 |
T |
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| Q |
219 |
attgacattccttcttcacaatctggatgacaaccataatttcccatgtcattcaatgtcaatgttaacgtagctccatgttcatctc |
306 |
Q |
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| T |
14024677 |
attgacattccttctgtacaatctggatgacaaccatagtttcccatgtcattcaatgtcaatgttaatgtagctccatgctcatctc |
14024764 |
T |
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