View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_8 (Length: 556)

Name: NF15962_low_8
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_8
NF15962_low_8
[»] chr3 (11 HSPs)
chr3 (79-240)||(35477522-35477683)
chr3 (299-556)||(35477746-35478021)
chr3 (16-81)||(35477410-35477475)
chr3 (290-365)||(50724373-50724449)
chr3 (290-365)||(50788399-50788475)
chr3 (296-365)||(53467960-53468030)
chr3 (290-365)||(43566809-43566886)
chr3 (290-328)||(13874885-13874923)
chr3 (292-363)||(23820636-23820709)
chr3 (290-365)||(33206762-33206839)
chr3 (289-355)||(35849302-35849370)
[»] chr5 (7 HSPs)
chr5 (292-364)||(29144149-29144223)
chr5 (290-365)||(22599949-22600025)
chr5 (290-365)||(33800898-33800975)
chr5 (290-359)||(29050805-29050876)
chr5 (292-365)||(33729785-33729860)
chr5 (305-365)||(27025442-27025503)
chr5 (290-365)||(30403755-30403832)
[»] chr8 (2 HSPs)
chr8 (305-388)||(2376539-2376624)
chr8 (290-365)||(43874990-43875067)
[»] chr7 (9 HSPs)
chr7 (291-365)||(35368402-35368478)
chr7 (290-361)||(5748950-5749021)
chr7 (290-365)||(27047728-27047805)
chr7 (291-388)||(2366363-2366469)
chr7 (305-388)||(23685547-23685628)
chr7 (290-328)||(31694076-31694114)
chr7 (290-352)||(14967660-14967724)
chr7 (290-352)||(15397136-15397200)
chr7 (295-365)||(30644179-30644251)
[»] chr2 (11 HSPs)
chr2 (295-388)||(36520768-36520865)
chr2 (290-365)||(10262744-10262821)
chr2 (290-328)||(42091325-42091364)
chr2 (290-365)||(3179329-3179406)
chr2 (290-365)||(22297465-22297542)
chr2 (290-365)||(30474208-30474285)
chr2 (295-364)||(38530208-38530280)
chr2 (288-328)||(9796901-9796941)
chr2 (305-388)||(24034044-24034127)
chr2 (295-365)||(32943349-32943421)
chr2 (295-365)||(44721717-44721789)
[»] chr1 (4 HSPs)
chr1 (290-365)||(4354118-4354195)
chr1 (290-365)||(49251408-49251485)
chr1 (290-335)||(20357465-20357511)
chr1 (290-335)||(20562444-20562490)
[»] chr4 (3 HSPs)
chr4 (291-352)||(26708578-26708641)
chr4 (290-363)||(29269330-29269404)
chr4 (290-365)||(3465588-3465665)
[»] chr6 (3 HSPs)
chr6 (290-328)||(34792895-34792933)
chr6 (305-365)||(6652231-6652291)
chr6 (290-365)||(15126248-15126324)
[»] scaffold0006 (1 HSPs)
scaffold0006 (290-338)||(159019-159068)
[»] scaffold0191 (1 HSPs)
scaffold0191 (290-388)||(16852-16952)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 35477522 - 35477683
Alignment:
Q  79 tacctgatagaaattcattaatgaacatgtggacttgtttctttggagcatacactaacaacaagatgtgcaagtaataaaagttatgtcgatcatttaa 178  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  35477522 tacctgatagaaattcattaatgaacatgtggacttgttcctttggagcatacactaacaacaagatgtgtaagtaataaaagctatgtcgatcatttaa 35477621  T
Q  179 tcacactgactattcttacggttcatcatcaactacatgggtcgcaacttcatatattaaga 240  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35477622 tcacaccgactattcttacggttcatcatcaactacatgggtcgcaacttcatatattaaga 35477683  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 299 - 556
Target Start/End: Original strand, 35477746 - 35478021
Alignment:
Q  299 gttggtggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattcacc-------gtgaattctagccattaggctactt 390  Q
    ||||||||||| |||||||||||||| |||||  || ||| ||||| | ||||||||| |||||||||       ||||||||||| ||||||||||| |    
T  35477746 gttggtggacattgcattattatatttaggtgtcggagttcgaactccggacaccccacttattcaccttataaggtgaattctagtcattaggctacct 35477845  T
Q  391 a----------tcaacaaacacgtttaagtttcatcgannnnnnnaggagatgaagaattattattacttaggaacaatgaatagaagaagaaaatataa 480  Q
    |          |||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35477846 aacaaaaaaaatcaacaaacacgtttaagtttcatagatttttttaggagatgaagaattattattacttaggaacaatgaatagaagaagaaaatataa 35477945  T
Q  481 tgctcattgacttttcatataaaaaatctttattgactttgaaaagaaaaattagaagggtcaaaagtggttatta 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35477946 tgctcattgacttttcatataaaaaatctttattgactttgaaaagaaaaattagaagagtcaaaagtggttatta 35478021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35477410 - 35477475
Alignment:
Q  16 aatatatcacaaacaagatgttatagtnnnnnnngttatgtagagagcgatttcgtaatcgaatac 81  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  35477410 aatatatcacaaacaagatgttatagtaaaaaaagttatgtagagagcgatttcgtaatcgaatac 35477475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 50724373 - 50724449
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgct-gggtttgaacttcagacaccccatttattcacc 365  Q
    |||| ||||||||||||||||||||||||||||| |||| | | ||||| |||| || ||||||||| |||||||||    
T  50724373 catagctcagttggtggacaatgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcacc 50724449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 50788475 - 50788399
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgct-gggtttgaacttcagacaccccatttattcacc 365  Q
    |||| ||||||||||||||||||||||||||||| |||| | | ||||| |||| || ||||||||| |||||||||    
T  50788475 catagctcagttggtggacaatgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcacc 50788399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 53467960 - 53468030
Alignment:
Q  296 tcagttggt-ggacaatgcattattatattcaggtgctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||| ||||||||||||||||||| |||| || ||||| |||| || ||||||||| |||||||||    
T  53467960 tcagttggtaggacaatgcattattatatgcaggggcggggttcgaacctcggacaccccacttattcacc 53468030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 43566886 - 43566809
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| | | ||||| |||| |||||||||||| |||||||||    
T  43566886 catagctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctcagacaccccacttattcacc 43566809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 13874923 - 13874885
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcagg 328  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  13874923 catagctcagttggtggacaatgcattattatatgcagg 13874885  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 23820636 - 23820709
Alignment:
Q  292 taactcagttggt-ggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattca 363  Q
    ||||||||||||| ||||||||||||||||||| |||| || || ||| ||||  ||||||||||| |||||||    
T  23820636 taactcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccagacaccccacttattca 23820709  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 33206762 - 33206839
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgct-gggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| ||| ||||| ||||  | ||||||||| |||||||||    
T  33206762 catagctcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcacc 33206839  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 355
Target Start/End: Complemental strand, 35849370 - 35849302
Alignment:
Q  289 ccataactcagttggt-ggacaatgcattattatattcaggtgctg-ggtttgaacttcagacacccca 355  Q
    ||||| |||||||||| ||||||||||||||||||| ||||  ||| |||| |||| ||||||||||||    
T  35849370 ccatagctcagttggtaggacaatgcattattatatgcagggactgtggttcgaacctcagacacccca 35849302  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 29144149 - 29144223
Alignment:
Q  292 taactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcac 364  Q
    ||||||||||||| ||||||||||||||||||| |||| | | ||||||||||| ||||||||||||||||||||    
T  29144149 taactcagttggtaggacaatgcattattatatgcaggggtcggggtttgaactccagacaccccatttattcac 29144223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 22600025 - 22599949
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctggg-tttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | |||| |||||||  ||||||||||| |||||||||    
T  22600025 cataactcagttggtaggacaatgcattattatatgcagg-gttgggatttgaaccccagacaccccacttattcacc 22599949  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 33800898 - 33800975
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||    
T  33800898 cataactcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcacc 33800975  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 29050805 - 29050876
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccattta 359  Q
    |||| |||||||||| ||||||||||||||||||| |||| | | ||||||||||| | |||||||||||||    
T  29050805 catagctcagttggtaggacaatgcattattatatgcaggggccggggtttgaactccggacaccccattta 29050876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 33729785 - 33729860
Alignment:
Q  292 taactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||| ||||||||||||||||||| |||| | | ||||| |||  |||||||||||| |||||||||    
T  33729785 taactcagttggtaggacaatgcattattatatgcaggggccggggttcgaatctcagacaccccacttattcacc 33729860  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 27025503 - 27025442
Alignment:
Q  305 ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||||||||||| ||||||||||| | ||||||| ||||  ||||||||||| |||||||||    
T  27025503 ggacaatgcattgttatattcaggggcctgggttcgaaccccagacaccccacttattcacc 27025442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 30403755 - 30403832
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||| ||||||||||| |||| || || ||||||||  | ||||||||| |||||||||    
T  30403755 cataactcagttggtaggacaatacattattatatacaggggccggagtttgaaccccggacaccccacttattcacc 30403832  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 2376539 - 2376624
Alignment:
Q  305 ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc-gtgaattctagccattaggctac 388  Q
    ||||||||||||||||||| |||| | | ||||| |||| || ||||| ||| ||||||||| |||||||||||||||||||||||    
T  2376539 ggacaatgcattattatatgcaggggtccgggttcgaacctcggacactccacttattcacctgtgaattctagccattaggctac 2376624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 43875067 - 43874990
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||| | |||||||||||||||||||  ||| |||| |||| ||||  ||||||||||| |||||||||    
T  43875067 cataactcagttgataggacaatgcattattatatgtaggggctgaggttcgaacaccagacaccccacttattcacc 43874990  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 35368402 - 35368478
Alignment:
Q  291 ataactcagttggt-ggacaatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    |||||||||||||| ||||| |||||||||||||| ||| |||| |||| ||||| | |||||||||||||||||||    
T  35368402 ataactcagttggtaggacattgcattattatatttaggggctgtggttcgaactccggacaccccatttattcacc 35368478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 5749021 - 5748950
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgctgggtttgaacttcagacaccccatttatt 361  Q
    |||| ||||||||||||| ||||||||||||||| |||| |||||||| |||| || |||| |||| |||||    
T  5749021 catagctcagttggtggataatgcattattatatacaggggctgggttcgaacctcggacatcccacttatt 5748950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 27047805 - 27047728
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgggttt-gaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| || ||| || |||| || |||||||||||||||||||    
T  27047805 catagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccatttattcacc 27047728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 2366363 - 2366469
Alignment:
Q  291 ataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc-------gtgaattctagccatt 381  Q
    |||||||||||| | ||||||||||||||||||| |||| | | ||||| |||||  |||||||||| |||||||||       ||||||||||||||||    
T  2366363 ataactcagttgataggacaatgcattattatatgcaggggtcggggttcgaactctagacaccccacttattcaccttataaggtgaattctagccatt 2366462  T
Q  382 aggctac 388  Q
    |||||||    
T  2366463 aggctac 2366469  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 23685628 - 23685547
Alignment:
Q  305 ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcaccgtgaattctagccattaggctac 388  Q
    ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||   ||||||||||| ||||||||    
T  23685628 ggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcacc---aattctagccactaggctac 23685547  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 31694076 - 31694114
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcagg 328  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  31694076 catagctcagttggtggacaatgcattattatatgcagg 31694114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 14967724 - 14967660
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacacc 352  Q
    ||||||||||||||| |||||||||||||||||||  ||| | | |||||||||| |||||||||    
T  14967724 cataactcagttggtaggacaatgcattattatatgtaggggtcggggtttgaacctcagacacc 14967660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 15397200 - 15397136
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacacc 352  Q
    ||||||||||||||| |||||||||||||||||||  ||| | | |||||||||| |||||||||    
T  15397200 cataactcagttggtaggacaatgcattattatatgtaggggtcggggtttgaacctcagacacc 15397136  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 30644179 - 30644251
Alignment:
Q  295 ctcagttggt-ggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattcacc 365  Q
    |||||||||| ||||||||||||||||||| |||| || || ||| ||||  ||||||||||| |||||||||    
T  30644179 ctcagttggtaggacaatgcattattatatgcaggggccggtgttcgaaccccagacaccccacttattcacc 30644251  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 36520865 - 36520768
Alignment:
Q  295 ctcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc--gtgaattctagccattaggctac 388  Q
    |||||||||| |||||||||||||||||||  ||| | | ||||| ||||  | ||||||||| |||||||||  |||||||||||||||||||||||    
T  36520865 ctcagttggtaggacaatgcattattatatgtaggggtcggggttcgaaccccggacaccccacttattcaccaggtgaattctagccattaggctac 36520768  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 10262744 - 10262821
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||    
T  10262744 cataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcacc 10262821  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 42091364 - 42091325
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcagg 328  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  42091364 cataactcagttggtaggacaatgcattattatattcagg 42091325  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 3179329 - 3179406
Alignment:
Q  290 cataactcagttggtgga-caatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| || |||||||||||||||| |||| |  | |||| |||| |||||||||||| |||||||||    
T  3179329 cataactcagttggtagaacaatgcattattatatgcaggggtcgaggttcgaacctcagacaccccacttattcacc 3179406  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 22297542 - 22297465
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgc-tgggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| ||  ||||| ||||  | |||||||||||||||||||    
T  22297542 catagctcagttggtaggacaatgcattattatatgcaggggcaggggttcgaaccccggacaccccatttattcacc 22297465  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 30474285 - 30474208
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| || | |||| ||||  ||||||||||| |||||||||    
T  30474285 catagctcagttggtaggacaatgcattattatatgcaggggccgaggttcgaaccccagacaccccacttattcacc 30474208  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 38530280 - 38530208
Alignment:
Q  295 ctcagttggt-ggacaatgcattattatattcaggtgct--gggtttgaacttcagacaccccatttattcac 364  Q
    |||||||||| ||||||||||||||||||| |||| |||  ||||| ||||| | ||||||||| ||||||||    
T  38530280 ctcagttggtaggacaatgcattattatatacaggggcttggggttcgaactgcggacaccccacttattcac 38530208  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 9796901 - 9796941
Alignment:
Q  288 accataactcagttggtggacaatgcattattatattcagg 328  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  9796901 accatagctcagttgatggacaatgcattattatatgcagg 9796941  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 24034127 - 24034044
Alignment:
Q  305 ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcaccgtgaattctagccattaggctac 388  Q
    ||||||||||||||||||| |||| | | ||||| |||| || ||||| ||| ||||||| ||||||||||||||| ||| ||||    
T  24034127 ggacaatgcattattatatgcaggggtcggggttcgaacctcggacactccacttattca-cgtgaattctagccactagactac 24034044  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 32943349 - 32943421
Alignment:
Q  295 ctcagttggt-ggacaatgcattattatattcaggtgct-gggtttgaacttcagacaccccatttattcacc 365  Q
    |||||||||| ||||||||||||||||||| |||  ||| ||||| ||| ||| ||||||||| |||||||||    
T  32943349 ctcagttggtaggacaatgcattattatatgcagaggctggggttcgaatttcggacaccccacttattcacc 32943421  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 44721789 - 44721717
Alignment:
Q  295 ctcagttggtgga-caatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||||||||| || |||||||||||||||| |||| | | ||||| |||| || |||||||||||||||||||    
T  44721789 ctcagttggtagaacaatgcattattatatgcaggggtcggggttcgaacctcggacaccccatttattcacc 44721717  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 4354195 - 4354118
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| | | ||||| ||||||| ||||||||| |||||||||    
T  4354195 catagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacttcggacaccccacttattcacc 4354118  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 49251485 - 49251408
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||    
T  49251485 cataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcacc 49251408  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 20357465 - 20357511
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctggg 335  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  20357465 cataactcagttggtaggacaatgcattattatatgcaggggctggg 20357511  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 20562490 - 20562444
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctggg 335  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  20562490 cataactcagttggtaggacaatgcattattatatgcaggggctggg 20562444  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 26708641 - 26708578
Alignment:
Q  291 ataactcagttggt--ggacaatgcattattatattcaggtgctgggtttgaacttcagacacc 352  Q
    ||||||||||||||  ||||||||||||||||||| |||| | |||||| |||| |||||||||    
T  26708641 ataactcagttggtagggacaatgcattattatatgcaggggttgggttcgaacctcagacacc 26708578  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 29269404 - 29269330
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgctggg-tttgaacttcagacaccccatttattca 363  Q
    |||| |||||||||||||||||||||||||||||  ||| |||||| || ||||  | ||||||||| |||||||    
T  29269404 catagctcagttggtggacaatgcattattatatgtaggggctgggattcgaaccccggacaccccacttattca 29269330  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 3465588 - 3465665
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| || || ||| ||||  | ||||||||| |||||||||    
T  3465588 cataactcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcacc 3465665  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 34792933 - 34792895
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcagg 328  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  34792933 catagctcagttggtggacaatgcattattatatgcagg 34792895  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 6652231 - 6652291
Alignment:
Q  305 ggacaatgcattattatattcaggtgctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||| ||||    ||||| ||||| |||||||||||||||||||||    
T  6652231 ggacaatgcattattttatgcagggttagggttcgaactccagacaccccatttattcacc 6652291  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 15126248 - 15126324
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||| |||||||||||  ||| |  ||||| ||||| | |||||||||||||||||||    
T  15126248 catagctcagttggtaggacaatacattattatatgtaggggaggggttcgaactccggacaccccatttattcacc 15126324  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 159019 - 159068
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgggttt 338  Q
    ||||||||||||||| ||||||||||||||||||| |||| || ||||||    
T  159019 cataactcagttggtaggacaatgcattattatatgcaggggccgggttt 159068  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 388
Target Start/End: Original strand, 16852 - 16952
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgggtttgaacttcagacaccccatttattcacc-gtgaattctagccattaggcta 387  Q
    |||| |||||||||| ||||||||||||||||||| |||| |  ||||| ||||  |  |||||| | |||||||||  ||||||||||||| |||||||    
T  16852 catagctcagttggtaggacaatgcattattatatgcaggggtcgggttcgaaccccgaacaccctacttattcacctttgaattctagccactaggcta 16951  T
Q  388 c 388  Q
    |    
T  16952 c 16952  T

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