View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_83 (Length: 310)

Name: NF15962_low_83
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_83
NF15962_low_83
[»] chr2 (13 HSPs)
chr2 (139-301)||(39381631-39381793)
chr2 (20-86)||(39381512-39381578)
chr2 (165-266)||(39389304-39389405)
chr2 (152-278)||(39421965-39422091)
chr2 (22-84)||(39468317-39468379)
chr2 (148-243)||(39414911-39415006)
chr2 (20-85)||(39192441-39192506)
chr2 (20-85)||(39198121-39198186)
chr2 (20-85)||(39215609-39215674)
chr2 (36-85)||(39389154-39389203)
chr2 (20-70)||(39459244-39459294)
chr2 (147-245)||(39473579-39473677)
chr2 (165-241)||(39222685-39222761)
[»] chr5 (1 HSPs)
chr5 (165-266)||(33560789-33560890)
[»] chr6 (1 HSPs)
chr6 (22-85)||(16113276-16113339)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 39381631 - 39381793
Alignment:
Q  139 gactcgaactccttaacttgacctttgagttcctccttctttgatttaattaccttcactttgccttcaaattcctcctcttttaattgaaactccttca 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39381631 gactcgaactccttaacttgacctttgagttcctccttctttgatttaatttccttcactttgccttcaaattcctcctcttttaattgaaactccttca 39381730  T
Q  239 tttgtccctcgaattgcttctctcttgattctatatcctttattcgtccttcaaagttcttct 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39381731 tttgtccctcgaattgcttctctcttgattctatatcctttattcgtccttcaaagttcttct 39381793  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 39381512 - 39381578
Alignment:
Q  20 gatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactc 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39381512 gatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactc 39381578  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 39389304 - 39389405
Alignment:
Q  165 gagttcctccttctttgatttaattaccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtccctcgaattgcttctctctt 264  Q
    ||||||||||| ||||||||||||  |||||||||   |||||||||||||||||||| ||||||||||||||| || ||| ||||||| || |||| ||    
T  39389304 gagttcctcctcctttgatttaatgcccttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctctttt 39389403  T
Q  265 ga 266  Q
    ||    
T  39389404 ga 39389405  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 278
Target Start/End: Original strand, 39421965 - 39422091
Alignment:
Q  152 taacttgacctttgagttcctccttctttgatttaattaccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtccctcgaa 251  Q
    |||| |||||||||| || ||||| |||||||||||   |||||| ||| || | |||||||||||||||| |  | ||||||||||||||||| |||||    
T  39421965 taacctgacctttgaattgctcctcctttgatttaaactccttcaatttaccgttaaattcctcctcttttgacaggaactccttcatttgtccatcgaa 39422064  T
Q  252 ttgcttctctcttgattctatatcctt 278  Q
    || ||| ||| ||||||| | ||||||    
T  39422065 tttcttttctattgattcgagatcctt 39422091  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 39468379 - 39468317
Alignment:
Q  22 tccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaac 84  Q
    |||||| |||||| ||||| |||||||||||||||||||| ||| |||| |||||||||||||    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaac 39468317  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 39414911 - 39415006
Alignment:
Q  148 tccttaacttgacctttgagttcctccttctttgatttaattaccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgt 243  Q
    |||||||||||||||||||  ||||||| |||||||| ||   |||||||||  ||||  |||||| |||||||| | || |||||||||||||||    
T  39414911 tccttaacttgacctttgaactcctcctcctttgattcaaactccttcacttgacctttgaattccccctcttttgagtggaactccttcatttgt 39415006  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 39192441 - 39192506
Alignment:
Q  20 gatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaact 85  Q
    |||||||| || ||| |||||||||||| |||||||| |||||||| |||| |||| |||||||||    
T  39192441 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaact 39192506  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 39198121 - 39198186
Alignment:
Q  20 gatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaact 85  Q
    |||||||| || ||| |||||||||||| |||||||| |||||||| |||| |||| |||||||||    
T  39198121 gatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaact 39198186  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 39215674 - 39215609
Alignment:
Q  20 gatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaact 85  Q
    |||||||| |||||| | |||||||||||||||||||||||| ||| || | || |||||||||||    
T  39215674 gatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaact 39215609  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 39389154 - 39389203
Alignment:
Q  36 ttcaaactgcttctcttttaacttgagctcattcatctttactttgaact 85  Q
    |||||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  39389154 ttcaaactgcttttcttttaagttgagctccttcacctttactttgaact 39389203  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 39459294 - 39459244
Alignment:
Q  20 gatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattca 70  Q
    |||||||| |||||| |||||| ||||| ||||||||||||||||| ||||    
T  39459294 gatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttca 39459244  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 39473579 - 39473677
Alignment:
Q  147 ctccttaacttgacctttgagttcctccttctttgatttaattaccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtcc 245  Q
    |||||||||  ||||||||| |||||||||||| | |||||   |||||||||  |  | |||||||||||||||| | || |||||||||| ||||||    
T  39473579 ctccttaacccgacctttgaattcctccttcttcgttttaaactccttcacttgactgttaaattcctcctcttttgactggaactccttcacttgtcc 39473677  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 39222761 - 39222685
Alignment:
Q  165 gagttcctccttctttgatttaattaccttcactttgccttcaaattcctcctcttttaattgaaactccttcattt 241  Q
    ||||||||||| ||||||||| ||  |||||||||   |||||||||||| ||| ||| ||| ||||||||| ||||    
T  39222761 gagttcctcctcctttgattttatgtccttcacttgttcttcaaattccttctcctttgattcaaactcctttattt 39222685  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 266
Target Start/End: Complemental strand, 33560890 - 33560789
Alignment:
Q  165 gagttcctccttctttgatttaattaccttcactttgccttcaaattcctcctcttttaattgaaactccttcatttgtccctcgaattgcttctctctt 264  Q
    |||||| |||| |||| |||||||  |||||||||   |||| ||||||||||||||| ||||||||||||||| |||||| | ||||| || |||| ||    
T  33560890 gagttcttcctcctttaatttaatgtccttcacttgttcttcgaattcctcctcttttgattgaaactccttcacttgtcctttgaatttctcctctttt 33560791  T
Q  265 ga 266  Q
    ||    
T  33560790 ga 33560789  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 16113339 - 16113276
Alignment:
Q  22 tccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaact 85  Q
    |||||| |||||  ||||| |||||||||||||||||||||||| |||  ||||||||||||||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaact 16113276  T

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