View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_84 (Length: 309)
Name: NF15962_low_84
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 56 - 294
Target Start/End: Complemental strand, 1607678 - 1607437
Alignment:
| Q |
56 |
taatttgtagatcttcaagtatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaatctccagatttacat |
155 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |
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| T |
1607678 |
taatttgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcttaaaaaaaatgttaaaattttgtaatctccagatttaaat |
1607579 |
T |
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| Q |
156 |
ttgattcatatgataatattgatgtcataacactatcgcttatgtac-ttttatatga--atatatatagtcatattaatcaaaatatctggattcgtca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
1607578 |
ttgattcatatgataatattgatgtcataacactatcgcttatgtactttttatatgaatatatatatagtcatactaatcaaaatttctggattcgtca |
1607479 |
T |
|
| Q |
253 |
cttgcagaaacagaagaagggtcatttccaaattggttttct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607478 |
cttgcagaaacagaagaagggtcatttccaaattggttttct |
1607437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 56 - 294
Target Start/End: Complemental strand, 1630671 - 1630433
Alignment:
| Q |
56 |
taatttgtagatcttcaagtatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaatctccagatttacat |
155 |
Q |
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|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1630671 |
taatgtgtagatgttcaagtatattcaatattttaggtatataatgttttaattttttcctaaaaaaaatgttaaaattttgtaatctccagatttacat |
1630572 |
T |
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| Q |
156 |
ttgattcatatgataatattgatgtcataacactatcgcttatgtacttttatatgaatatatatagtcatattaatcaaaatatctggattcgtcactt |
255 |
Q |
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| T |
1630571 |
ttgattcatataataatattgaagtcatagcactatcgcttatgtacttttatatgaatatatatagtcatactaatcaaaaattttggattcgtcactt |
1630472 |
T |
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| Q |
256 |
gcagaaacagaagaagggtcatttccaaattggttttct |
294 |
Q |
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| T |
1630471 |
gcagaaacagaagaagggtcattttcaaattggttttct |
1630433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 56 - 294
Target Start/End: Complemental strand, 1624688 - 1624458
Alignment:
| Q |
56 |
taatttgtagatcttcaagtatcttcaatattttaggtatataatgttttaattttttcctnnnnnnnntgttaaaattttgtaatctccagatttacat |
155 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |
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| T |
1624688 |
taatttgtagatgttcaagtatcttcaatattttaggtatataatgttttaattttttcttaaaaaaaatgttaaaattttgtaatctccagatttaaat |
1624589 |
T |
|
| Q |
156 |
ttgattcatatgataatattgatgtcataacactatcgcttatgtacttttatatgaatatatatagtcatattaatcaaaatatctggattcgtcactt |
255 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||| |
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| T |
1624588 |
ttaattcatatgataatattgatgtcataacactatggcttatgtactttt--------atatatagtcatactaatcaaaatttctggatccgtcactt |
1624497 |
T |
|
| Q |
256 |
gcagaaacagaagaagggtcatttccaaattggttttct |
294 |
Q |
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| T |
1624496 |
gcagaaacagaagaagggtcatttccaaattggttttct |
1624458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 165 - 294
Target Start/End: Original strand, 10819711 - 10819846
Alignment:
| Q |
165 |
atgataatattgatgtcataacactatcgcttatgtac-ttttatatgaatatatatagtcatattaatcaaaatatctggattcgtcacttgcagaaac |
263 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |||| ||||||| ||||| |||||||||| |
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| T |
10819711 |
atgataatattgatgtcataacactatcgcttatgtactttttatataaatatatatagtcatactaatctaaatttctggatccgtca-ttgcagaaac |
10819809 |
T |
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| Q |
264 |
------agaagaagggtcatttccaaattggttttct |
294 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
10819810 |
agaaatagaagaagggtcacttccaaattggttttct |
10819846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 1624769 - 1624734
Alignment:
| Q |
18 |
acatagagtaatataaatatgatagggttaaaaatg |
53 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1624769 |
acatagagtaatataaatatgatagggttaaaaatg |
1624734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 10819577 - 10819635
Alignment:
| Q |
56 |
taatttgtagatcttcaagtatcttcaatattttaggtatataatgttttaattttttc |
114 |
Q |
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|||||||||||| | |||| |||||||| |||||||||||||| |||||||||||||| |
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|
| T |
10819577 |
taatttgtagatgatgaagtttcttcaattttttaggtatataaagttttaattttttc |
10819635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 1603031 - 1602996
Alignment:
| Q |
72 |
aagtatcttcaatattttaggtatataatgttttaa |
107 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
1603031 |
aagtatcttcaattttttaggtatataatgttttaa |
1602996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 1607761 - 1607726
Alignment:
| Q |
18 |
acatagagtaatataaatatgatagggttaaaaatg |
53 |
Q |
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| T |
1607761 |
acatagagtaatataaatatgatagggttgaaaatg |
1607726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 1630754 - 1630719
Alignment:
| Q |
18 |
acatagagtaatataaatatgatagggttaaaaatg |
53 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
1630754 |
acatagagtaatataaatatgatagggttgaaaatg |
1630719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 18785528 - 18785484
Alignment:
| Q |
250 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttct |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18785528 |
tcacttgcagaaacagaagaagggtcatttccaaattggttttct |
18785484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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