View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_85 (Length: 309)

Name: NF15962_low_85
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_85
NF15962_low_85
[»] chr4 (3 HSPs)
chr4 (17-290)||(52350451-52350724)
chr4 (115-254)||(20303938-20304076)
chr4 (117-243)||(20298067-20298193)
[»] chr5 (11 HSPs)
chr5 (115-254)||(30473961-30474100)
chr5 (117-254)||(30481989-30482126)
chr5 (117-221)||(30398671-30398775)
chr5 (119-254)||(30434481-30434616)
chr5 (118-254)||(30339834-30339970)
chr5 (115-253)||(30429526-30429664)
chr5 (117-254)||(30243681-30243818)
chr5 (119-254)||(29870845-29870980)
chr5 (115-253)||(30523010-30523148)
chr5 (115-253)||(30563350-30563488)
chr5 (194-254)||(30395902-30395962)
[»] chr7 (1 HSPs)
chr7 (117-243)||(26705920-26706046)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 52350451 - 52350724
Alignment:
Q  17 agcaaaggtaataacagtggtggtggaagtatataagaataaacaagttgactcaatgttcttcaaacatgtctgcttttttattctaatcaataccaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52350451 agcaaaggtaataacagtggtggtggaagtatataagaataaacaagttgactcaatgttcttcaaacatgtctgcttttttattctattcaataccaaa 52350550  T
Q  117 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350551 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaa 52350650  T
Q  217 gtgagatttcgaatacattctggcaaggatctcaatccacaactagatatttcaattgtttgaagggattgaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52350651 gtgagatttcgaatacattctggcaaggatctcaatccacaactagatatttcaattgttcgaagggattgaag 52350724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 20304076 - 20303938
Alignment:
Q  115 aattttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtg 214  Q
    ||||||||||| |||||||| |||||  | ||||| ||||||||    || || || ||||||||||||||||| ||| ||||| |||  ||||||||||    
T  20304076 aattttggaatatgcgctatcttgtccaa-tcctcgcctgttcccgtcttgcaccgttcctttaatgttgggcattcataaatactcaaaacctcaagtg 20303978  T
Q  215 aagtgagatttcgaatacattctggcaaggatctcaatcc 254  Q
    |||||||   |||||||| ||| |||||| ||||||||||    
T  20303977 aagtgaggaatcgaataccttcaggcaagcatctcaatcc 20303938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 20298193 - 20298067
Alignment:
Q  117 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaa 216  Q
    ||||||||| || ||||| |||||  | |||||||||||||| || || |||||   ||||||||| ||||||| ||  |||||||| | |||||| |||    
T  20298193 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaagagaa 20298094  T
Q  217 gtgagatttcgaatacattctggcaag 243  Q
    ||||| | | |||| | ||||||||||    
T  20298093 gtgaggtgttgaatgccttctggcaag 20298067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 30473961 - 30474100
Alignment:
Q  115 aattttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtg 214  Q
    |||||||||||||||||||| |||||  ||||||| || |||||||  ||  ||||||||||||||||||||||| | | |||  |||  | ||||||||    
T  30473961 aattttggaatgtgcgctatcttgtcccagtcctcaccggttcctttcttcaatcgctcctttaatgttgggcaacctcgaattttcaaaaactcaagtg 30474060  T
Q  215 aagtgagatttcgaatacattctggcaaggatctcaatcc 254  Q
    ||||||| | | ||||| |||| || ||||||||||||||    
T  30474061 aagtgaggtgttgaatagattcgggaaaggatctcaatcc 30474100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 30481989 - 30482126
Alignment:
Q  117 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaa 216  Q
    ||||||||| || ||||| |||||  | ||||||| |||||| || || ||||| |||| |||||||||||| || ||||| ||||| |||||||| |||    
T  30481989 ttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcattcccaaattgtcagaacctcaagagaa 30482088  T
Q  217 gtgagatttcgaatacattctggcaaggatctcaatcc 254  Q
    ||||| | ||||||||  || |||||| ||| ||||||    
T  30482089 gtgaggtgtcgaataccctccggcaagcatcgcaatcc 30482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 30398671 - 30398775
Alignment:
Q  117 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaa 216  Q
    ||||||||| || ||||| |||||  | |||||||||||||| || || ||||| |||||||||||||||||||||   || ||||| |||||||| |||    
T  30398671 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcagaacctcaagagaa 30398770  T
Q  217 gtgag 221  Q
    |||||    
T  30398771 gtgag 30398775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 30434481 - 30434616
Alignment:
Q  119 ttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaagt 218  Q
    ||||||| || ||||| |||||  | |||||||||||||| || || ||||| |||||||||||||||||||||   |||| ||| | |||||| |||||    
T  30434481 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagctcaagagaagt 30434580  T
Q  219 gagatttcgaatacattctggcaaggatctcaatcc 254  Q
    ||| | ||||||||  || |||||| ||| ||||||    
T  30434581 gaggtgtcgaataccctccggcaagcatcgcaatcc 30434616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 30339970 - 30339834
Alignment:
Q  118 tttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaag 217  Q
    |||||||| || ||||| |||||  | |||||||||||||| || || ||||| |||| |||||||||||||| |   |||||||| | |||||| ||||    
T  30339970 tttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcagaagctcaagagaag 30339871  T
Q  218 tgagatttcgaatacattctggcaaggatctcaatcc 254  Q
    |||| | ||||||||  || |||||| ||| ||||||    
T  30339870 tgaggtgtcgaataccctccggcaagcatcgcaatcc 30339834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 30429526 - 30429664
Alignment:
Q  115 aattttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtg 214  Q
    ||||| ||||||||  |||| |||||  ||||||| ||| |||| || |||||||||||| |||  | ||||||| || |||| | ||| ||||||||||    
T  30429526 aatttaggaatgtgttctatcttgtcccagtcctctcctattccctccttacatcgctccgttacagctgggcaaccataaattgccagaacctcaagtg 30429625  T
Q  215 aagtgagatttcgaatacattctggcaaggatctcaatc 253  Q
    | ||||| |   |||||| |||||||||| |||||||||    
T  30429626 atgtgaggtgcagaataccttctggcaagcatctcaatc 30429664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 30243818 - 30243681
Alignment:
Q  117 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaa 216  Q
    ||||||||| || ||||| |||||  | |||||||||||||| || || ||||| |||| ||||||||| || | | ||||| |||  |||||||| |||    
T  30243818 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagagaa 30243719  T
Q  217 gtgagatttcgaatacattctggcaaggatctcaatcc 254  Q
    ||||| | ||||||||  || |||||| ||| ||||||    
T  30243718 gtgaggtgtcgaataccctccggcaagcatcgcaatcc 30243681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 29870845 - 29870980
Alignment:
Q  119 ttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaagt 218  Q
    ||||||| || ||||| |||||  | |||||||||||||| || || ||||| |||| ||||||||||||| |   ||| | ||| | ||||||||||||    
T  29870845 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccctcaattgccagaagctcaagtgaagt 29870944  T
Q  219 gagatttcgaatacattctggcaaggatctcaatcc 254  Q
    ||| | ||||||||  || |||||| ||| ||||||    
T  29870945 gaggtgtcgaataccctccggcaagcatcgcaatcc 29870980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 30523148 - 30523010
Alignment:
Q  115 aattttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtg 214  Q
    ||||||||||||||  ||||  ||||  ||||||| ||| || |||| |||||||||||   ||  | ||||||| || |||  ||||| ||||||||||    
T  30523148 aattttggaatgtgttctatcatgtcccagtcctctcctatttcttccttacatcgctctgctacagctgggcaaccataaactgtcagaacctcaagtg 30523049  T
Q  215 aagtgagatttcgaatacattctggcaaggatctcaatc 253  Q
    | ||||| |  ||||||| |||||||||| |||||||||    
T  30523048 atgtgaggtggcgaataccttctggcaagcatctcaatc 30523010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 30563488 - 30563350
Alignment:
Q  115 aattttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtg 214  Q
    ||||||||||||||  ||||  ||||  ||||||| ||| || |||| |||||||||||   ||  | ||||||| || |||  ||||| ||||||||||    
T  30563488 aattttggaatgtgttctatcatgtcccagtcctctcctatttcttccttacatcgctctgctacagctgggcaaccataaactgtcagaacctcaagtg 30563389  T
Q  215 aagtgagatttcgaatacattctggcaaggatctcaatc 253  Q
    | ||||| |  ||||||| |||||||||| |||||||||    
T  30563388 atgtgaggtggcgaataccttctggcaagcatctcaatc 30563350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 30395902 - 30395962
Alignment:
Q  194 aaatagtcagtacctcaagtgaagtgagatttcgaatacattctggcaaggatctcaatcc 254  Q
    |||||||||| |||||||||||||||||   | |||||| |||| |||||||| |||||||    
T  30395902 aaatagtcagaacctcaagtgaagtgaggcgtggaataccttcttgcaaggatttcaatcc 30395962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 26705920 - 26706046
Alignment:
Q  117 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaatcacaaatagtcagtacctcaagtgaa 216  Q
    ||||||||| || ||||| |||||  | |||||||||||||| || || ||||| |||| |||||||||||||   |||||  |||| | |||||| |||    
T  26705920 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactcaagagaa 26706019  T
Q  217 gtgagatttcgaatacattctggcaag 243  Q
    ||||| | ||||||||  |||||||||    
T  26706020 gtgaggtgtcgaataccctctggcaag 26706046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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