View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_86 (Length: 308)

Name: NF15962_low_86
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_86
NF15962_low_86
[»] chr7 (1 HSPs)
chr7 (8-291)||(12417570-12417853)
[»] chr8 (2 HSPs)
chr8 (105-169)||(13223967-13224031)
chr8 (38-71)||(30213771-30213804)
[»] scaffold0032 (1 HSPs)
scaffold0032 (38-71)||(78775-78808)
[»] chr4 (4 HSPs)
chr4 (38-71)||(18445336-18445369)
chr4 (36-71)||(19052738-19052773)
chr4 (36-71)||(22223463-22223498)
chr4 (36-81)||(39981249-39981294)
[»] chr1 (2 HSPs)
chr1 (36-81)||(12439926-12439971)
chr1 (36-71)||(12397235-12397270)
[»] chr2 (2 HSPs)
chr2 (43-83)||(14794468-14794508)
chr2 (36-71)||(8685016-8685051)
[»] chr5 (3 HSPs)
chr5 (36-71)||(22747821-22747856)
chr5 (36-81)||(32452513-32452558)
chr5 (37-69)||(22820785-22820817)
[»] chr6 (2 HSPs)
chr6 (38-71)||(20395346-20395379)
chr6 (36-76)||(28952698-28952738)
[»] chr3 (1 HSPs)
chr3 (36-72)||(20747321-20747357)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 12417853 - 12417570
Alignment:
Q  8 attatactatctgttatgtatatatacttgaaatcccttggaagtgcaagaggactggactacttctgaattgttgtgttttgtacttaatgtgctgcac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417853 attatactatctgttatgtatatatacttgaaatcccttggaagtgcaagaggactggactacttctgaattgttgtgttttgtacttaatgtgctgcac 12417754  T
Q  108 tcagactctacatcagaatctgaatatcttagattctgattaggatgttaaactaaagaaaagtaaagccacaaaaagcttccccccacgcccaatattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417753 tcagactctacatcagaatctgaatatcttagattctgattaggatgttaaactaaagaaaagtaaagccacaaaaagcttccccccacgcccaatattt 12417654  T
Q  208 acttataagtcttacagtaacttattttttcttgcattatgatcttcttaaaaaatttatcgaggtgaatgttgtattggagaa 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12417653 acttataagtcttacagtaacttattttttcttgcattatgatcttcttaaaaaatttatcgaggtgaatgttgtattggagaa 12417570  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 13223967 - 13224031
Alignment:
Q  105 cactcagactctacatcagaatctgaatatcttagattctgattaggatgttaaactaaagaaaa 169  Q
    |||||||||||||||||||||| || ||||||||||||||||| ||| |||| ||| ||||||||    
T  13223967 cactcagactctacatcagaatatgtatatcttagattctgatcaggctgttcaaccaaagaaaa 13224031  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 30213804 - 30213771
Alignment:
Q  38 aaatcccttggaagtgcaagaggactggactact 71  Q
    |||||||||||||||||||| |||||||||||||    
T  30213804 aaatcccttggaagtgcaaggggactggactact 30213771  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 78808 - 78775
Alignment:
Q  38 aaatcccttggaagtgcaagaggactggactact 71  Q
    ||||||||||||||||||||||||||||||||||    
T  78808 aaatcccttggaagtgcaagaggactggactact 78775  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 18445369 - 18445336
Alignment:
Q  38 aaatcccttggaagtgcaagaggactggactact 71  Q
    ||||||||||||||||||||||||||||||||||    
T  18445369 aaatcccttggaagtgcaagaggactggactact 18445336  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 19052773 - 19052738
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactact 71  Q
    |||||||||||||||||||||| |||||||||||||    
T  19052773 tgaaatcccttggaagtgcaaggggactggactact 19052738  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 22223463 - 22223498
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactact 71  Q
    |||||||||||||||||||||||||||| |||||||    
T  22223463 tgaaatcccttggaagtgcaagaggacttgactact 22223498  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 39981249 - 39981294
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactacttctgaattgt 81  Q
    |||||| ||||||||||||||| ||||||||||||| ||| |||||    
T  39981249 tgaaattccttggaagtgcaagtggactggactactcctggattgt 39981294  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 12439926 - 12439971
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactacttctgaattgt 81  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||    
T  12439926 tgaaatcccttggaagtgcaagaggattggagtactcctgaattgt 12439971  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 12397270 - 12397235
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactact 71  Q
    |||||||||||||||||||||| |||||||||||||    
T  12397270 tgaaatcccttggaagtgcaaggggactggactact 12397235  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 14794468 - 14794508
Alignment:
Q  43 ccttggaagtgcaagaggactggactacttctgaattgttg 83  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  14794468 ccttggaagtgcaaggggactggactacttccgaattgttg 14794508  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 8685051 - 8685016
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactact 71  Q
    |||||||||||||||||||||| |||||||||||||    
T  8685051 tgaaatcccttggaagtgcaaggggactggactact 8685016  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 22747856 - 22747821
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactact 71  Q
    |||||||||||||||||||||| |||||||||||||    
T  22747856 tgaaatcccttggaagtgcaaggggactggactact 22747821  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 32452513 - 32452558
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactacttctgaattgt 81  Q
    |||||||||||| ||||| ||| ||||||||||||||||| |||||    
T  32452513 tgaaatcccttgaaagtgtaaggggactggactacttctggattgt 32452558  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 22820817 - 22820785
Alignment:
Q  37 gaaatcccttggaagtgcaagaggactggacta 69  Q
    |||||| ||||||||||||||||||||||||||    
T  22820817 gaaatctcttggaagtgcaagaggactggacta 22820785  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 20395379 - 20395346
Alignment:
Q  38 aaatcccttggaagtgcaagaggactggactact 71  Q
    ||||||||| ||||||||||||||||||||||||    
T  20395379 aaatcccttagaagtgcaagaggactggactact 20395346  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 28952698 - 28952738
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactacttctga 76  Q
    |||||| |||| |||||||||||||||||||||||| ||||    
T  28952698 tgaaattccttagaagtgcaagaggactggactactcctga 28952738  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 20747321 - 20747357
Alignment:
Q  36 tgaaatcccttggaagtgcaagaggactggactactt 72  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  20747321 tgaaatcccttgaaagtgcaaggggactggactactt 20747357  T

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