View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_low_88 (Length: 303)
Name: NF15962_low_88
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_88 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 554715 - 554485
Alignment:
| Q |
26 |
ttgtattgagagaagtgagtataagattaagggattaagtttgttacactttgcatttgttgagtatgactcatagt------ataagttggtagggtcc |
119 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
554715 |
ttgtattgagagaagtgaatgtaagattaagggattatgtttgttacactttacatttgttgagtatggatcatagtttaacgataagttggtagggtcc |
554616 |
T |
|
| Q |
120 |
ctcatggtttaggggaaatctcgtaaatttgctatagtatttaaacaaaaattgtaatctttaaccctaagagtgaaatttaataatagaattgtaatgt |
219 |
Q |
| |
|
|| | |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |
|
|
| T |
554615 |
cttaaggtttaggggaaatattgtaaattggctatagtatttaaacaaaaattgtaatctttaaccctaagattaaaatttaatagtagaattgtaatgt |
554516 |
T |
|
| Q |
220 |
atcaattttgcagtcagagacaaaggcacac |
250 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
|
|
| T |
554515 |
atcaattttgcagtcagagacataggcacac |
554485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 542361 - 542182
Alignment:
| Q |
128 |
ttaggggaaatctcgtaaatttgctatagtatt----taaacaaaaattgtaatctttaaccctaagagtgaaatttaataatagaattgtaatgtatca |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
542361 |
ttaggggaaatcttgtaaatttgctatagtattaatttaaacaaaaattgtaatctttaaccctaagagtgaaatttaataatagaattgtaaagtatca |
542262 |
T |
|
| Q |
224 |
attttgcagtcagagacaaaggcacacaattggccaaactttgtgatgaaatctcaggtgttctttgtttgcgtttttgt |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
542261 |
attttgcagtcagagacataggcacacaattggccaaactttgtgatgaaatctcaggtgttctttatttgcgtttttgt |
542182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 103 - 297
Target Start/End: Complemental strand, 574760 - 574565
Alignment:
| Q |
103 |
ataagttggtagggtccctcatggtttaggggaaatctcgtaaatttgctatagtatttaaacaaaaa-ttgtaatctttaaccctaagagtgaaattta |
201 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||| ||||||||| ||||| |||||| |||||| ||||||| ||||||||| |
|
|
| T |
574760 |
ataagttggtagggtccttcaaggtttagggcaaatcttgtaaattggctattgtatttaaaaaaaaaattgtaacctttaatcctaagattgaaattta |
574661 |
T |
|
| Q |
202 |
ataatagaattgtaatgtatcaattttgcagtcagagacaaaggcacacaattggccaaactttgtgatgaaatctcaggtgttctttgtttgcgt |
297 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
574660 |
ataatagaattgtaatgaatcaattctgcagtcagagacataggcacacaattggccaaactttgtgatgaaatctcgggtgttctttgtttgcgt |
574565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 488090 - 487897
Alignment:
| Q |
26 |
ttgtattgagagaagtgagtataagattaagggattaagtttgttaca---ctttgcatttgttgagtatgactcatagt------ataagttggtaggg |
116 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
488090 |
ttgtattgagagaagcgagtgtaagattaagggattaagtttgttacagtactttgcatttgttgagtatggctcatagtttaacgataagttggtaggg |
487991 |
T |
|
| Q |
117 |
tccctcatggtttaggggaaatctcgtaaatttgctatagtatttaaacaaaaattgtaatctttaaccctaagagtgaaatttaataatagaa |
210 |
Q |
| |
|
||||| | |||||||||||||||| || |||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
487990 |
tcccttaaggtttaggggaaatcttgtcaattgggtatagtatttaaacaaaaattgtaatctttaaccccaagattgaaatttaataatagaa |
487897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 542782 - 542724
Alignment:
| Q |
18 |
catagttgttgtattgagagaagtgagtataagattaagggattaagtttgttacactt |
76 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
542782 |
catagttattgtattgagagaagtgagtataagattaagggattaagtttgctacactt |
542724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 574806 - 574768
Alignment:
| Q |
26 |
ttgtattgagagaagtgagtataagattaagggattaag |
64 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
574806 |
ttgtattgagagaagtgagtgtaagattaagggattaag |
574768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 487887 - 487838
Alignment:
| Q |
252 |
attggccaaactttgtgatgaaatctcaggtgttctttgtttgcgttttt |
301 |
Q |
| |
|
||||||||||||||||||| |||| || ||||||||||||||| |||||| |
|
|
| T |
487887 |
attggccaaactttgtgatcaaatttcgggtgttctttgtttgtgttttt |
487838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University