View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_low_89 (Length: 302)
Name: NF15962_low_89
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_89 |
 | |
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| [»] scaffold1789 (1 HSPs) |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 22018981 - 22018709
Alignment:
| Q |
14 |
atatcattccagcctttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagat |
113 |
Q |
| |
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||||||||| ||| ||||||||||||| ||||||||||||| ||||||||| || |||||||||||||| | |||||||||||||||| ||| ||||||| |
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| T |
22018981 |
atatcattctagcatttctcccaaaaggccttctatttctatttctcaagatgtttcatcatctaggaccaagaaacgagcaaaaaaggttgttgaagat |
22018882 |
T |
|
| Q |
114 |
gatacaagcatgagagaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatg |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
22018881 |
gatacaagcatgagagaaatttctaatactttaaagacaatagttgaggtgtttaaaatgagctcagaggagttggtcaaatagagtaagagtgctaatg |
22018782 |
T |
|
| Q |
214 |
gtgaagatatttgggctgaattagtcgaaattggtgttgagccaacttccttgcctaaagtatacatgtacct |
286 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22018781 |
gtggagatatttgggctgaattagttgaaattggtgttgaaccaacttccttgcctaaagtatacatgtacct |
22018709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 20714527 - 20714303
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || |||||| |||| |||| | | ||||||||| ||||||||||| |
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|
| T |
20714527 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaacgtgcaagaaaggtggatgaagatgagacaagcatgagc |
20714428 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | ||||||||||||||| ||||||| ||| || ||||||| |||||| |
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|
| T |
20714427 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgcaaagttggtcaaacagaataagagttctagtgatgaagatgtttggg |
20714328 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttga |
253 |
Q |
| |
|
|| | || ||||| ||||||||||| |
|
|
| T |
20714327 |
ctaacttggtcgagattggtgttga |
20714303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1789 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1789
Description:
Target: scaffold1789; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 816 - 1040
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || |||||| |||| |||| | | ||||||||| ||||||||||| |
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|
| T |
816 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaacgtgcaagaaaggtggatgaagatgagacaagcatgagc |
915 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | |||||||||||||||| ||||||| ||| || ||||||| |||||| |
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|
| T |
916 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgtagagttggtcaaacagaataagagttctagtgctgaagatgtttggg |
1015 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttga |
253 |
Q |
| |
|
|| | || ||||| ||||||||||| |
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|
| T |
1016 |
ctaacttggtcgagattggtgttga |
1040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 18366 - 18142
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || |||||| |||| |||| | | ||||||||| ||||||||||| |
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|
| T |
18366 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaacgtgcaagaaaggtggatgaagatgagacaagcatgagc |
18267 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | |||||||||||||||| ||||||| ||| || ||||||| |||||| |
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|
| T |
18266 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgcagagttggtcaaacagaataagagttctagtgctgaagatgtttggg |
18167 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttga |
253 |
Q |
| |
|
|| | || ||||| ||||||||||| |
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| T |
18166 |
ctaacttggtcgagattggtgttga |
18142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 22528228 - 22528004
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || |||||| |||| |||| | | ||||||||| ||||||||||| |
|
|
| T |
22528228 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaacgtgcaagaaaggtggatgaagatgagacaagcatgagc |
22528129 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | |||||||||||||||| ||||||| ||| || ||||||| |||||| |
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|
| T |
22528128 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgcagagttggtcaaacagaataagagttctagtgctgaagatgtttggg |
22528029 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttga |
253 |
Q |
| |
|
|| | || ||||| ||||||||||| |
|
|
| T |
22528028 |
ctaacttggtcgagattggtgttga |
22528004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 25990849 - 25990625
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || |||||| |||| |||| | | ||||||||| ||||||||||| |
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|
| T |
25990849 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaacgtgcaagaaaggtggatgaagatgagacaagcatgagc |
25990750 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | |||||||||||||||| ||||||| ||| || ||||||| |||||| |
|
|
| T |
25990749 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgcagagttggtcaaacagaataagagttctagtgctgaagatgtttggg |
25990650 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttga |
253 |
Q |
| |
|
|| | || ||||| ||||||||||| |
|
|
| T |
25990649 |
ctaacttggtcgagattggtgttga |
25990625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 33094342 - 33094582
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || |||||| |||| |||| | | ||||||||| ||||||||||| |
|
|
| T |
33094342 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaacgtgcaagaaaggtggatgaagatgagacaagcatgagc |
33094441 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | |||||||||||||||| ||||||| ||| || ||||||| |||||| |
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|
| T |
33094442 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgcagagttggtcaaacagaataagagttctagtgctgaagatgtttggg |
33094541 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttgagccaacttccttgcct |
269 |
Q |
| |
|
|| | || ||||| ||||||||||| | ||||||||||| |
|
|
| T |
33094542 |
ctaacttggtcgagattggtgttgaagaagcttccttgcct |
33094582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 269
Target Start/End: Original strand, 20986428 - 20986668
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || |||||| |||| |||| | | ||||||||| ||||||||||| |
|
|
| T |
20986428 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaacgtgcaagaaaggtggatgaagatgagacaagcatgagc |
20986527 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | |||||||||||||||| ||||||| ||| || ||||||| |||||| |
|
|
| T |
20986528 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgcagagttggtcaaacagaataagagttctagtgctgaagatgtttggg |
20986627 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttgagccaacttccttgcct |
269 |
Q |
| |
|
|| | || ||||| ||||||||||| | ||||||||||| |
|
|
| T |
20986628 |
ctaacttggtcgagattggtgttgaagaagcttccttgcct |
20986668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 13173415 - 13173176
Alignment:
| Q |
29 |
ttctcccaaaagaccttctatttctacttctcaagacgtgtcatcatctaggactaggaaacgagcaaaaaagattgctgaagatgatacaagcatgaga |
128 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| || |||||||||||| || ||||| |||| |||| | | ||||||||| ||||||||||| |
|
|
| T |
13173415 |
ttctcctaaaagaccttctattaggaagcctcaagatgtaccatcatctaggaataagaaact-gcaagaaaggtggatgaagatgagacaagcatgagc |
13173317 |
T |
|
| Q |
129 |
gaaatttctaagactttacagacaatggttgaggtgtttaaaatgagctcagaggagttggtcaaacagagtaagagtgctaatggtgaagatatttggg |
228 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||| ||||| || ||| | | | |||||||||||||||| ||||||| ||| || ||||||| |||||| |
|
|
| T |
13173316 |
gaaattgctaagacttttaagaaaatggctgagatgtttgaactgaacactgcagagttggtcaaacagaataagagttctagtgctgaagatgtttggg |
13173217 |
T |
|
| Q |
229 |
ctgaattagtcgaaattggtgttgagccaacttccttgcct |
269 |
Q |
| |
|
|| | || ||||| ||||||||||| | ||||||||||| |
|
|
| T |
13173216 |
ctaacttggtcgagattggtgttgaagaagcttccttgcct |
13173176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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