View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15962_low_9 (Length: 540)
Name: NF15962_low_9
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 23869676 - 23869144
Alignment:
| Q |
1 |
ctttacaaatcacaatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctagctca |
100 |
Q |
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| T |
23869676 |
ctttacaaatcacaatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctagctca |
23869577 |
T |
|
| Q |
101 |
cacctcagaactttcatacacgaatgttaagaatgcaataggcaatacacggtacctaatagacaggcctgtacttacaaatacaattctaaaaacacta |
200 |
Q |
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| T |
23869576 |
cacctcagaactttcatacacgaatgttaagaatgcaataggcaatacac-gtacctaatagacaggcctgtacttacaaatacaattctaaaaacacta |
23869478 |
T |
|
| Q |
201 |
ggttagatagaaattttggaaagtcttaacagtaagaattaaaaaccagtccattgttagtcattaaaagtcaattaaaattcattattcattctaaaac |
300 |
Q |
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| T |
23869477 |
ggttagatagaaattttggaaagtc-taacagtaagaattaaaaaccagtccattgtttgtcattaaaagtcaattaaaattcatt----attctaaaac |
23869383 |
T |
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| Q |
301 |
aaaacatgatcaattatatatcattactcagtaaaacccatagcaattgttc--aaaacnnnnnnnnncttgtgataaagttcttggcataatgatataa |
398 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
23869382 |
aaaacatgatcaactatatatcattactcagtaaaacccgtagcaattgttcaaaaaaaaaaaaaaaacttgtgataaagttcttggcataatgatataa |
23869283 |
T |
|
| Q |
399 |
gatggttttactttcttggtttaaatagcgcttcatgctttcttacacaaattaaacaaccaagaaactaagcaaattgaaccatgcaaattttttgtag |
498 |
Q |
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| T |
23869282 |
gatggttttactttcttggtttaaatagcgcttcatgctttctcatacaaattaaacaaccaagaaactaagcaaattgaaccatgcaaattttttgtag |
23869183 |
T |
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| Q |
499 |
tcaaaatatcattcattccatcattatgatacacagaaa |
537 |
Q |
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| T |
23869182 |
tcaaaatatcattcattccatcattatgatacacagaaa |
23869144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 23452589 - 23452677
Alignment:
| Q |
13 |
caatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctagctcac |
101 |
Q |
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|||||||||||||| ||| |||||| | || ||||||||||||||| || | ||||||| |||| ||||||||| ||||||| |||||| |
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| T |
23452589 |
caatatagaattaaatttaaacaatatgttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcac |
23452677 |
T |
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