View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_90 (Length: 300)

Name: NF15962_low_90
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_90
NF15962_low_90
[»] chr6 (6 HSPs)
chr6 (22-284)||(10082255-10082517)
chr6 (22-123)||(28694668-28694769)
chr6 (22-123)||(4443508-4443609)
chr6 (22-123)||(13512507-13512608)
chr6 (129-219)||(10098126-10098216)
chr6 (213-257)||(10098219-10098263)
[»] chr2 (3 HSPs)
chr2 (22-123)||(37363993-37364094)
chr2 (22-123)||(35600593-35600694)
chr2 (22-123)||(40656395-40656496)
[»] chr7 (2 HSPs)
chr7 (22-123)||(18334418-18334519)
chr7 (22-123)||(38702736-38702837)
[»] chr4 (1 HSPs)
chr4 (22-123)||(38965832-38965933)
[»] chr8 (1 HSPs)
chr8 (27-123)||(9764365-9764461)
[»] chr5 (2 HSPs)
chr5 (22-123)||(33886920-33887021)
chr5 (22-123)||(37567333-37567434)
[»] chr3 (2 HSPs)
chr3 (22-123)||(26249337-26249438)
chr3 (22-123)||(33901464-33901565)
[»] chr1 (1 HSPs)
chr1 (22-123)||(34676493-34676594)
[»] scaffold0164 (1 HSPs)
scaffold0164 (22-123)||(232-333)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 10082255 - 10082517
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||    
T  10082255 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttccactccgctgcccaacacct 10082354  T
Q  122 tgttcagttgaccttttaaattaataattgcatgatacttttgtagatataataattatagacatgagaatcaccagaataacactaacactctcaatga 221  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  10082355 tgttcaattgaccttttaaattaataattgcatgatacttttgtagatataataattatagacatgagaatcaccaaattaacagtaacactctcaatga 10082454  T
Q  222 tggcacacaattctaagtacaaattaatagcaccacaccaataatgtatgttttgcaaccaac 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10082455 tggcacacaattctaagtacaaattaatagcaccacaccaataatgtatgttttgcaaccaac 10082517  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 28694769 - 28694668
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  28694769 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 28694670  T
Q  122 tg 123  Q
    ||    
T  28694669 tg 28694668  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 4443508 - 4443609
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  4443508 ttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 4443607  T
Q  122 tg 123  Q
    ||    
T  4443608 tg 4443609  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 13512608 - 13512507
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  13512608 ttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 13512509  T
Q  122 tg 123  Q
    ||    
T  13512508 tg 13512507  T

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Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 10098126 - 10098216
Alignment:
Q  129 ttgaccttttaaattaataattgcatgatacttttgtagatataataattatagacatgagaatcaccagaataacactaacactctcaat 219  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  10098126 ttgaccttttaaattaataattccatggtacttctgtagatataataattatagacatgagaaacaccaaaataacactaacactctcaat 10098216  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 10098219 - 10098263
Alignment:
Q  213 tctcaatgatggcacacaattctaagtacaaattaatagcaccac 257  Q
    ||||||||||||||||||| ||| | |||||||||||| ||||||    
T  10098219 tctcaatgatggcacacaaatctcaatacaaattaataacaccac 10098263  T

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Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 37363993 - 37364094
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  37363993 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttccactctgctgcccaacacct 37364092  T
Q  122 tg 123  Q
    ||    
T  37364093 tg 37364094  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 35600694 - 35600593
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  35600694 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 35600595  T
Q  122 tg 123  Q
    ||    
T  35600594 tg 35600593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 40656496 - 40656395
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  40656496 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 40656397  T
Q  122 tg 123  Q
    ||    
T  40656396 tg 40656395  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 18334418 - 18334519
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  18334418 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 18334517  T
Q  122 tg 123  Q
    ||    
T  18334518 tg 18334519  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 38702736 - 38702837
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  38702736 ttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 38702835  T
Q  122 tg 123  Q
    ||    
T  38702836 tg 38702837  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 38965832 - 38965933
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  38965832 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 38965931  T
Q  122 tg 123  Q
    ||    
T  38965932 tg 38965933  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 9764461 - 9764365
Alignment:
Q  27 cctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacaccttg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||||    
T  9764461 cctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaggagccctcacattttgtcggcttctactatgctgcccaacaccttg 9764365  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 33886920 - 33887021
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  33886920 ttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 33887019  T
Q  122 tg 123  Q
    ||    
T  33887020 tg 33887021  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 37567333 - 37567434
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  37567333 ttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcccaacacct 37567432  T
Q  122 tg 123  Q
    ||    
T  37567433 tg 37567434  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 26249438 - 26249337
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  26249438 ttcgccctcaccatacacttcataggggtcatccgcatcatcatcacaccctggaggagccctcacactctctcggcttccactctgctgcccaacacct 26249339  T
Q  122 tg 123  Q
    ||    
T  26249338 tg 26249337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 33901464 - 33901565
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||| | | |||||||||||| ||||||||| |||||    
T  33901464 ttcgccctcaccatacacttcataggggtcttccgcatcatcatcacacactagaggagccctcacactctctcggcttccactatgctgcccaccacct 33901563  T
Q  122 tg 123  Q
    ||    
T  33901564 tg 33901565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 34676493 - 34676594
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||| | | ||||||||||||||||||||||||||||    
T  34676493 ttcgccctcaccatacacttcataggggtcgtccgcatcatcagcacaaactggaggagccctcacactctctcggcttccactctgctgcccaacacct 34676592  T
Q  122 tg 123  Q
    ||    
T  34676593 tg 34676594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 333 - 232
Alignment:
Q  22 ttcgccctcaccatacacttcataggggtcgtccgcatcatcatcacacactggaagatccctcacattttgtcggcttccactctgctgcccaacacct 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| | | |||||||||||||||||||| || ||||    
T  333 ttcgccctcaccatacacttcataggggtcatccgcatcatcatcacacactggaggagccctcacactctctcggcttccactctgctgcctaatacct 234  T
Q  122 tg 123  Q
    ||    
T  233 tg 232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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