View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15962_low_91 (Length: 297)
Name: NF15962_low_91
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15962_low_91 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 63 - 297
Target Start/End: Complemental strand, 34431031 - 34430791
Alignment:
| Q |
63 |
atcaacagttttggatatattatatagaaa-ttaaggaaggttggtttgatagttaggaaaactgacaatagtgtctgcatttttgttaatttgataatg |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34431031 |
atcaacagttttggatatattatatagaaaattaaggaagtttggtttgatagttaggaaaactgacaatagtgtctgcatttttgttaatttgataatg |
34430932 |
T |
|
| Q |
162 |
aaataattttgtctatatgcactacgggtattaattcacattgttctggttcggttaattagattatcaatttattactgttatctgataaaataaaata |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34430931 |
aaattattttgtctatatgcactacgggtattaattcacattgttctgtttcggttaattagattatcaatttattactgttatctgataaaataaaata |
34430832 |
T |
|
| Q |
262 |
a-----aatatggtttggctgcccaatttcaatgagtttaa |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34430831 |
aaataaaatatggtttggctgcccaatttcaatgagtttaa |
34430791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1329531 - 1329583
Alignment:
| Q |
1 |
catgctagcacaaagcaataaaacagatgttcaagaagagaacatatcggatg |
53 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||| ||||||| |
|
|
| T |
1329531 |
catgctagcacaaagcaataaagctgatgttcaagaagagaacaattcggatg |
1329583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University