View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_92 (Length: 296)

Name: NF15962_low_92
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_92
NF15962_low_92
[»] chr3 (2 HSPs)
chr3 (4-265)||(52498110-52498371)
chr3 (163-265)||(52497528-52497630)
[»] chr1 (3 HSPs)
chr1 (4-264)||(45470069-45470329)
chr1 (4-264)||(42308315-42308575)
chr1 (190-264)||(45471031-45471105)
[»] chr2 (2 HSPs)
chr2 (4-264)||(9204517-9204776)
chr2 (163-264)||(9203936-9204037)
[»] chr5 (1 HSPs)
chr5 (4-265)||(5234151-5234410)
[»] chr6 (1 HSPs)
chr6 (12-76)||(32430887-32430951)
[»] chr4 (2 HSPs)
chr4 (187-235)||(50237168-50237215)
chr4 (209-245)||(441322-441358)
[»] scaffold0036 (1 HSPs)
scaffold0036 (181-209)||(13202-13230)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 52498110 - 52498371
Alignment:
Q  4 cctttgtaaagattccaactataaagtttaaaaagcttttcatcaatggagaattcgtagactcagtttcaggcnnnnnnncctattagtttcctaaata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||       |||||||||||||| ||||    
T  52498110 cctttgtaaagattccaactataaagtttaaaaagcttttcatcaatggagaatttgtggactcagtttcaggctttttttcctattagtttcctgaata 52498209  T
Q  104 tttgcctcaattctctgtccggtaggtatgtacagaagctgcnnnnnnnnnnnnnnnnncattcaccttccgtaggtatgtacaggatgtgttatttgag 203  Q
    ||||||||||||||||||| ||||||||||||||||||||||                 ||||||| |||||||||||||||||||||||||||||||||    
T  52498210 tttgcctcaattctctgtctggtaggtatgtacagaagctgcaaaaataaaattaaaaacattcactttccgtaggtatgtacaggatgtgttatttgag 52498309  T
Q  204 ggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaaccttct 265  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  52498310 ggtatttttgtaactttagggggcccaaagagatatgaggggggcttataaagtaaccttct 52498371  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 52497630 - 52497528
Alignment:
Q  163 cattcaccttccgtaggtatgtacaggatgtgttatttgagggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaacct 262  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  52497630 cattcaccttccataggtatgtacaggatgtgttatttgagggtatttttgtaactttagggggcctaaagagatatggagggggcttataaagtaacct 52497531  T
Q  263 tct 265  Q
    |||    
T  52497530 tct 52497528  T

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Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 45470329 - 45470069
Alignment:
Q  4 cctttgtaaagattccaactataaagtttaaaaagcttttcatcaatggagaattcgtagactcagtttcaggcnnnnnnncctattagtttcctaaata 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  45470329 cctttgtaaagattccaactataaagtttaaaaagtttttcatcaatggagaattcgtggactcagtttcaggctttttttcctattagtttcctaaata 45470230  T
Q  104 tttgcctcaattctctgtccggtaggtatgtacagaagctgc-nnnnnnnnnnnnnnnnncattcaccttccgtaggtatgtacaggatgtgttatttga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||| ||||||||||||||||    
T  45470229 tttgcctcaattctctgtccggtaggtatgtacagaagctgcaaaaaataaaattaaaaacattcaccttccgtaggtatgtataggatgtgttatttga 45470130  T
Q  203 gggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaaccttc 264  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  45470129 gggtatttttgtaactttagggggcctaaaaagatatga-ggggacttataaagtaaccttc 45470069  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 42308575 - 42308315
Alignment:
Q  4 cctttgtaaagattccaactataaagtttaaaaagcttttcatcaatggagaattcgtagactcagtttcaggcnnnnnnncctattagtttcctaaata 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||       | |||||||||||||||||    
T  42308575 cctttgtaaagattccaactataaagttttaaaagcttttcatcaatggagaatttatggactcagtttcaggctttttttcatattagtttcctaaata 42308476  T
Q  104 tttgcctcaattctctgtccggtaggtatgtacagaagctgcnnnnnnnnnnnnnnnnncattcaccttccgtaggtatgtacaggatgtgttatttgag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||| ||||||||||||||    
T  42308475 tttgcctcaattctctgtccggtaggtatgtacagaagctgcaaaaataaaattaaaaacattcaccttccgtaggtatgtacagaatgtgttatttgag 42308376  T
Q  204 ggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaaccttc 264  Q
    | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  42308375 gatatttttgtaactttagggggcctagagagatatgaggggggcttataaagtaaccttc 42308315  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 45471031 - 45471105
Alignment:
Q  190 atgtgttatttgagggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaaccttc 264  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  45471031 atgtgttatttgagggtatttttgtaactttaaggggcctaaagagatatgaggggggcttataaagtaaccttc 45471105  T

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Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 9204517 - 9204776
Alignment:
Q  4 cctttgtaaagattccaactataaagtttaaaaagcttttcatcaatggagaattcgtagactcagtttcaggcnnnnnnncctattagtttcctaaata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||       |||||||||||||||||||    
T  9204517 cctttgtaaagattccaactataaagtttaaaaagcttttcatcaatggagaatttgtggactcagtttcaggctttttttcctattagtttcctaaata 9204616  T
Q  104 tttgcctcaattctctgtccggtaggtatgtacagaagctgcnnnnnnnnnnnnnnnnncattcaccttccgtaggtatgtacaggatgtgttatttgag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||| |||||||||||||||    
T  9204617 tttgcctcaattctctgtccggtaggtatgtacagaagctgcaaaaataaaattaaaaacattcaccttccgtaggtatgtacatgatgtgttatttgag 9204716  T
Q  204 ggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaaccttc 264  Q
    |||||||||||||||||||  |||||||| |||||||| ||||||||||||||||||||||    
T  9204717 ggtatttttgtaactttagaaggcctaaagagatatga-gggggcttataaagtaaccttc 9204776  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 9204037 - 9203936
Alignment:
Q  163 cattcaccttccgtaggtatgtacaggatgtgttatttgagggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaacct 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||    
T  9204037 cattcaccttccgtaggtatgtacaggatgtgttatttgagggtatttttgtaactttagggggtctaaagagatatggagggggcttataaagtaacct 9203938  T
Q  263 tc 264  Q
    ||    
T  9203937 tc 9203936  T

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Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 5234151 - 5234410
Alignment:
Q  4 cctttgtaaagattccaactataaagtttaaaaagcttttcatcaatggagaattcgtagactcagtttcaggcnnnnnnncctattagtttcctaaata 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||       | |||||||||||||||||    
T  5234151 cctttgtaaagattccaactataaagttttaaaagcttttcatcaatggataattcgtggactcagtttcaggctttttttcatattagtttcctaaata 5234250  T
Q  104 tttgcctcaattctctgtccggtaggtatgtacagaagctgcnnnnnnnnnnnnnnnnncattcaccttccgtaggtatgtacaggatgtgttatttgag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||| ||||||||||||||    
T  5234251 tttgcctcaattctctgtccggtaggtatgtacagaagctgcaaaaataaaattaaaaacattcaccttccgtaggtatgtacagaatgtgttatttgag 5234350  T
Q  204 ggtatttttgtaactttagggggcctaaaaagatatgaggggggcttataaagtaaccttct 265  Q
    | |||||||||||||||||||| |||  | ||||||||||| ||||||||||||||||||||    
T  5234351 gatatttttgtaactttaggggccct--agagatatgagggaggcttataaagtaaccttct 5234410  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 32430887 - 32430951
Alignment:
Q  12 aagattccaactataaagtttaaaaagcttttcatcaatggagaattcgtagactcagtttcagg 76  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  32430887 aagattccaactataaagtttaaaaagctttttatcaatggaggattcgtggattcagtttcagg 32430951  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 50237168 - 50237215
Alignment:
Q  187 aggatgtgttatttgagggtatttttgtaactttagggggcctaaaaag 235  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||    
T  50237168 aggatgtgttattt-agggcatttttgtaactttagggggcctaaaaag 50237215  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 441358 - 441322
Alignment:
Q  209 ttttgtaactttagggggcctaaaaagatatgagggg 245  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  441358 ttttgtaattttagggggcctaaagagatatgagggg 441322  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 13202 - 13230
Alignment:
Q  181 atgtacaggatgtgttatttgagggtatt 209  Q
    |||||||||||||||||||||||||||||    
T  13202 atgtacaggatgtgttatttgagggtatt 13230  T

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