View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15962_low_97 (Length: 287)

Name: NF15962_low_97
Description: NF15962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15962_low_97
NF15962_low_97
[»] chr5 (17 HSPs)
chr5 (38-137)||(40292538-40292637)
chr5 (188-261)||(15480218-15480291)
chr5 (188-261)||(19523097-19523170)
chr5 (188-261)||(36188008-36188081)
chr5 (188-250)||(31881590-31881652)
chr5 (195-249)||(34756615-34756669)
chr5 (121-173)||(40292705-40292757)
chr5 (188-250)||(16592845-16592907)
chr5 (188-250)||(30853270-30853332)
chr5 (195-252)||(2274809-2274866)
chr5 (199-247)||(22987470-22987518)
chr5 (197-250)||(31194767-31194820)
chr5 (195-250)||(16199026-16199081)
chr5 (190-250)||(27923891-27923951)
chr5 (196-250)||(16799556-16799610)
chr5 (196-250)||(38869593-38869647)
chr5 (196-232)||(8433593-8433629)
[»] chr2 (18 HSPs)
chr2 (191-261)||(3952906-3952976)
chr2 (188-261)||(7162681-7162754)
chr2 (188-249)||(3155007-3155068)
chr2 (188-249)||(6964796-6964857)
chr2 (188-250)||(12337689-12337751)
chr2 (188-249)||(4505683-4505744)
chr2 (188-249)||(34693151-34693212)
chr2 (188-249)||(34715563-34715624)
chr2 (188-250)||(40635966-40636028)
chr2 (196-247)||(3399521-3399572)
chr2 (187-249)||(8907330-8907392)
chr2 (196-250)||(41213928-41213982)
chr2 (190-250)||(27506975-27507035)
chr2 (195-250)||(9045843-9045898)
chr2 (195-250)||(26715942-26715997)
chr2 (198-250)||(24410250-24410302)
chr2 (200-231)||(5952949-5952980)
chr2 (195-250)||(10762799-10762854)
[»] chr8 (12 HSPs)
chr8 (188-261)||(20003865-20003938)
chr8 (188-249)||(2952473-2952534)
chr8 (188-249)||(3048774-3048835)
chr8 (188-249)||(5860996-5861057)
chr8 (188-249)||(30883114-30883175)
chr8 (196-261)||(37430290-37430355)
chr8 (195-250)||(45472202-45472257)
chr8 (196-250)||(41878177-41878231)
chr8 (190-250)||(42600590-42600650)
chr8 (196-236)||(10917206-10917246)
chr8 (195-250)||(23606855-23606910)
chr8 (196-232)||(45294597-45294633)
[»] chr1 (21 HSPs)
chr1 (188-261)||(14146209-14146282)
chr1 (187-261)||(6888472-6888546)
chr1 (188-261)||(41697268-41697341)
chr1 (195-261)||(6771707-6771773)
chr1 (196-261)||(3406335-3406400)
chr1 (196-261)||(3440420-3440485)
chr1 (188-249)||(44655543-44655604)
chr1 (196-261)||(16139972-16140037)
chr1 (196-249)||(27906949-27907002)
chr1 (195-250)||(10912094-10912149)
chr1 (195-250)||(23181722-23181777)
chr1 (49-116)||(32856758-32856825)
chr1 (196-242)||(5027982-5028028)
chr1 (188-230)||(50880572-50880614)
chr1 (190-250)||(13913716-13913776)
chr1 (190-250)||(40502024-40502084)
chr1 (195-250)||(1367111-1367166)
chr1 (195-236)||(44895478-44895519)
chr1 (195-250)||(9173255-9173310)
chr1 (196-250)||(27559459-27559513)
chr1 (196-249)||(51607674-51607727)
[»] chr7 (12 HSPs)
chr7 (188-261)||(12596418-12596491)
chr7 (188-250)||(28749585-28749647)
chr7 (196-261)||(10955390-10955455)
chr7 (188-249)||(18777019-18777080)
chr7 (195-250)||(29076941-29076998)
chr7 (194-250)||(48984077-48984133)
chr7 (195-250)||(47985202-47985257)
chr7 (195-236)||(19691908-19691949)
chr7 (199-250)||(20091514-20091565)
chr7 (195-250)||(24525918-24525973)
chr7 (196-250)||(23551305-23551359)
chr7 (193-250)||(38415108-38415165)
[»] chr3 (24 HSPs)
chr3 (188-261)||(21582672-21582745)
chr3 (188-261)||(50258723-50258796)
chr3 (188-261)||(42098702-42098775)
chr3 (188-249)||(36716276-36716337)
chr3 (188-249)||(38681348-38681409)
chr3 (200-261)||(47467597-47467658)
chr3 (188-261)||(53149446-53149519)
chr3 (188-250)||(3954852-3954914)
chr3 (195-249)||(27078819-27078873)
chr3 (195-249)||(27084616-27084670)
chr3 (195-249)||(54619454-54619508)
chr3 (196-250)||(13795199-13795253)
chr3 (200-249)||(36605862-36605911)
chr3 (195-250)||(1148354-1148409)
chr3 (188-247)||(18372037-18372095)
chr3 (188-231)||(29620618-29620661)
chr3 (193-250)||(44708291-44708348)
chr3 (195-247)||(48156953-48157005)
chr3 (195-250)||(9878919-9878974)
chr3 (195-250)||(34290874-34290929)
chr3 (195-250)||(43207474-43207529)
chr3 (195-250)||(53507117-53507172)
chr3 (190-250)||(50939468-50939528)
chr3 (195-250)||(8074087-8074142)
[»] chr4 (29 HSPs)
chr4 (198-261)||(1105445-1105508)
chr4 (188-261)||(37514562-37514635)
chr4 (195-258)||(5128975-5129038)
chr4 (188-250)||(10431442-10431504)
chr4 (188-249)||(55255084-55255145)
chr4 (188-250)||(17679221-17679283)
chr4 (188-250)||(47127985-47128047)
chr4 (195-250)||(48208461-48208516)
chr4 (196-250)||(45560704-45560758)
chr4 (200-249)||(38209842-38209891)
chr4 (195-250)||(13459795-13459850)
chr4 (203-250)||(9579469-9579516)
chr4 (203-250)||(9585164-9585211)
chr4 (195-250)||(27596639-27596694)
chr4 (188-238)||(32915301-32915351)
chr4 (200-250)||(34769533-34769583)
chr4 (197-250)||(35780556-35780609)
chr4 (195-243)||(54779452-54779500)
chr4 (195-250)||(24969253-24969308)
chr4 (196-250)||(16844839-16844893)
chr4 (196-250)||(37777459-37777513)
chr4 (195-236)||(32128403-32128444)
chr4 (188-228)||(23510922-23510962)
chr4 (190-250)||(54083478-54083538)
chr4 (193-236)||(2790988-2791031)
chr4 (188-231)||(10978148-10978191)
chr4 (220-250)||(23510887-23510917)
chr4 (200-250)||(40089340-40089390)
chr4 (214-250)||(51964204-51964240)
[»] chr6 (17 HSPs)
chr6 (188-261)||(24711131-24711204)
chr6 (200-261)||(30832656-30832717)
chr6 (196-250)||(23070889-23070943)
chr6 (188-249)||(13727650-13727711)
chr6 (188-245)||(21280337-21280394)
chr6 (188-249)||(21479288-21479349)
chr6 (190-250)||(19741223-19741283)
chr6 (196-250)||(12083640-12083694)
chr6 (188-241)||(27314773-27314826)
chr6 (188-249)||(33773904-33773964)
chr6 (195-250)||(1156017-1156072)
chr6 (188-241)||(27579084-27579137)
chr6 (198-250)||(19986980-19987032)
chr6 (195-250)||(17353770-17353825)
chr6 (195-250)||(27788922-27788977)
chr6 (195-250)||(20711952-20712007)
chr6 (190-236)||(235473-235519)
[»] scaffold0070 (1 HSPs)
scaffold0070 (188-250)||(1015-1077)
[»] scaffold0001 (2 HSPs)
scaffold0001 (188-229)||(181439-181480)
scaffold0001 (222-261)||(181851-181890)
[»] scaffold0039 (1 HSPs)
scaffold0039 (195-250)||(106390-106445)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 40292538 - 40292637
Alignment:
Q  38 ttcattgcctatggaggattcagttaattcaagttttcaatttgattgtttaaactttccttttgaatcgattgatctcggctaagtttccaatttaatt 137  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40292538 ttcattgccaatggaggattcagttaattcaagttttcaatttgattgtttaaactttccttttgaatccattgatctcggctaagtttccaatttaatt 40292637  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 15480291 - 15480218
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15480291 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 15480218  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 19523097 - 19523170
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523097 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 19523170  T

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Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 36188081 - 36188008
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36188081 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggtt 36188008  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 31881652 - 31881590
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31881652 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 31881590  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 34756669 - 34756615
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34756669 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 34756615  T

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Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 40292705 - 40292757
Alignment:
Q  121 aagtttccaatttaattcaaatttcaagttaatgtggtggatgtttgtcatgt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40292705 aagtttccaatttaattcaaatttcaagttaatgtggtggatgtttgtcatgt 40292757  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 16592907 - 16592845
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||    
T  16592907 ggcgtccctgagggggtgcaaacagctcaaacgagctggacctcctttaaggatgggcctcaa 16592845  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 30853270 - 30853332
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  30853270 ggcgtcccttagggggtgcaaacagctcaaacgagctgggcctccttcaaggatggacctcaa 30853332  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 2274809 - 2274866
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaaga 252  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  2274809 ctgagggggtgcaaacagctcaaatgagttgggcctccctcaaggatggacctcaaga 2274866  T

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Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 22987518 - 22987470
Alignment:
Q  199 gggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 247  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22987518 gggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcct 22987470  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 31194820 - 31194767
Alignment:
Q  197 gagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  31194820 gaggaggtgcaaacaactcaaacgaactgggcctctctcaaggatgggcctcaa 31194767  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 16199081 - 16199026
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  16199081 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16199026  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 27923891 - 27923951
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||||||||||||||||||||  ||||||| |||||||||   |||||||||||    
T  27923891 cgtccctgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27923951  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 16799610 - 16799556
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||  ||||| |||||||||||   |||||||||||    
T  16799610 tgagggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa 16799556  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 38869647 - 38869593
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||   ||||||||||||||||   |||||||||||    
T  38869647 tgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaa 38869593  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 8433629 - 8433593
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctcc 232  Q
    |||||||||||||||||||| || |||||||||||||    
T  8433629 tgagggggtgcaaacagctctaatgagctgggcctcc 8433593  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 3952906 - 3952976
Alignment:
Q  191 gtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3952906 gtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 3952976  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 7162681 - 7162754
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7162681 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcccacaaggatgggcctcaagagtgggggtt 7162754  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 3155007 - 3155068
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3155007 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3155068  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 6964796 - 6964857
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6964796 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 6964857  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 12337751 - 12337689
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12337751 ggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 12337689  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 4505683 - 4505744
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4505683 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctca 4505744  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 34693151 - 34693212
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34693151 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34693212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 34715563 - 34715624
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34715563 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctca 34715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 40635966 - 40636028
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  40635966 ggcgtccctaagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcttcaa 40636028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 3399521 - 3399572
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 247  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  3399521 tgagggggtgcaaacagctcaaacgagttggacctccctcaaggatgggcct 3399572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 8907392 - 8907330
Alignment:
Q  187 aggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||||| |||||| ||||    
T  8907392 aggcgtccctgagggggtgcaaacagctcaaacaagctggacctccctcaaagatgggtctca 8907330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 41213982 - 41213928
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
T  41213982 tgagggggtgcaaacagcttaaacgagctgggtctccctcgaggatgggcctcaa 41213928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 27507035 - 27506975
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  27507035 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27506975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 9045843 - 9045898
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  9045843 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 9045898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 26715942 - 26715997
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  26715942 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 26715997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 24410250 - 24410302
Alignment:
Q  198 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  24410250 agggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24410302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 5952980 - 5952949
Alignment:
Q  200 ggggtgcaaacagctcaaacgagctgggcctc 231  Q
    ||||||||||||||||||||||||||||||||    
T  5952980 ggggtgcaaacagctcaaacgagctgggcctc 5952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 10762854 - 10762799
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||| ||||||||||||||  ||||||||| ||||||||  |||||||||||    
T  10762854 ctgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaa 10762799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 20003938 - 20003865
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20003938 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 20003865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 2952534 - 2952473
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2952534 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 2952473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 3048835 - 3048774
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3048835 ggcgtttctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 5861057 - 5860996
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5861057 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 5860996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 30883114 - 30883175
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30883114 ggcgtccctgagtgggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 37430355 - 37430290
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  37430355 tgagggggtgcaaacagctcaaacgagttgggccttccttaaggatgggcctcaagagtgggggtt 37430290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 45472202 - 45472257
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  45472202 ctgagggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaa 45472257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 41878177 - 41878231
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  41878177 tgagggggtgcaaacagctcaaacgagttgagcctccctcaaggatgagcctcaa 41878231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 42600590 - 42600650
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  42600590 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 42600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 10917206 - 10917246
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctca 236  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  10917206 tgagggggtgcaaacagctcaacagagctgggcctccctca 10917246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 23606910 - 23606855
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  ||| |||||||||||||   |||||||||||    
T  23606910 ctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 23606855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 45294633 - 45294597
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctcc 232  Q
    |||||||||||||||||||| || |||||||||||||    
T  45294633 tgagggggtgcaaacagctctaatgagctgggcctcc 45294597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 14146209 - 14146282
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14146209 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 14146282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 6888472 - 6888546
Alignment:
Q  187 aggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6888472 aggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggtt 6888546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 41697341 - 41697268
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41697341 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcatcaagagtgggggtt 41697268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 6771707 - 6771773
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6771707 ctgagggggtgcaaacagctcaaacgagctgggcctcccttaaggatgggcctcaagagtgggggtt 6771773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 3406335 - 3406400
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3406335 tgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaagagtgggggtt 3406400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 3440485 - 3440420
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3440485 tgagggggtgcaaacagctcaaacgagctgggcctcccccaaggatgggcctcaagagtgggggtt 3440420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 44655543 - 44655604
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44655543 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 44655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 16139972 - 16140037
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  16139972 tgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggtctcaagcgtgggggtt 16140037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 27907002 - 27906949
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27907002 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27906949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 10912149 - 10912094
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  10912149 ctgagggggtgcgaacagctcaaacgagctgggcctcctccaaggatgggcctcaa 10912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 23181722 - 23181777
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  23181722 ctgagggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaa 23181777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 32856758 - 32856825
Alignment:
Q  49 tggaggattcagttaattcaagttttcaatttgattgtttaaactttccttttgaatcgattgatctc 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||   | |||| |||||| |||||||||    
T  32856758 tggaggattcagttaattcaagtttccaatttgattgtttaactatgccttatgaatcaattgatctc 32856825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 5028028 - 5027982
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatg 242  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  5028028 tgagggggtgcaaacagctcaaccgagctgggcctcccccaaggatg 5027982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 50880572 - 50880614
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcct 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  50880572 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcct 50880614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 13913776 - 13913716
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  13913776 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 13913716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 40502084 - 40502024
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  40502084 cgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 1367166 - 1367111
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  1367166 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 1367111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 44895478 - 44895519
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctca 236  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  44895478 ctgagggggtgcaaacagctcaacagagctgggcctccctca 44895519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 9173310 - 9173255
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  ||| |||||||||||||   |||||||||||    
T  9173310 ctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa 9173255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 27559459 - 27559513
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||  ||||||| |||||||||   |||||||||||    
T  27559459 tgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa 27559513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 51607727 - 51607674
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||  ||||||||||    
T  51607727 tgaggtggtgcaaacagctcaatagagctgggccttcctcaatcatgggcctca 51607674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 12596491 - 12596418
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12596491 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggccctcaagagtgggggtt 12596418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 28749585 - 28749647
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28749585 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 10955390 - 10955455
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10955390 tgagggggtgcaaatagctcaaacgagttgggcctccctcaaggatgggcctcaagagtgggggtt 10955455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 18777080 - 18777019
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18777080 ggcgtccctgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 18777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 29076941 - 29076998
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcct--ccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||    
T  29076941 ctgagggggtgcaaacagcttaaacgagcagggcctccccctcaaggatgggcctcaa 29076998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 48984133 - 48984077
Alignment:
Q  194 tctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  48984133 tctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 48984077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 47985257 - 47985202
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  47985257 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 47985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 19691908 - 19691949
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctca 236  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  19691908 ctgagggggtgcaaacagctcaacagagctgggcctccctca 19691949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 20091565 - 20091514
Alignment:
Q  199 gggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  20091565 gggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa 20091514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 24525973 - 24525918
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  ||||||||||||||| |   |||||||||||    
T  24525973 ctgagggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 24525918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 23551359 - 23551305
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||  ||| ||| ||||||||||  |||||||||||    
T  23551359 tgagggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaa 23551305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 38415165 - 38415108
Alignment:
Q  193 ctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||| ||||||||||||||  ||||||||||||||| |   |||||||||||    
T  38415165 ctctgaggggatgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 21582672 - 21582745
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  21582672 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcatcccttaaggatgggcctcaagagtgggggtt 21582745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 50258796 - 50258723
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50258796 ggcgtccctgagggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaagagtgggggtt 50258723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 42098702 - 42098775
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42098702 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctcccacaaggatgggcctcaagagtgggggtt 42098775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 36716337 - 36716276
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36716337 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 38681409 - 38681348
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38681409 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 47467597 - 47467658
Alignment:
Q  200 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47467597 ggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaagagtgggggtt 47467658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 53149519 - 53149446
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| || |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  53149519 ggcgtccctcagggggtgcaaacagctcaaacgagctgggcctccaccaaggatgggcctcaagagtgggggtt 53149446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 3954914 - 3954852
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3954914 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 3954852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 27078873 - 27078819
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078873 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 27084670 - 27084616
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27084670 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 54619508 - 54619454
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54619508 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 54619454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 13795199 - 13795253
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13795199 tgagggcgtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 13795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 36605862 - 36605911
Alignment:
Q  200 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605862 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 1148409 - 1148354
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  1148409 ctgagggggtgcgaacagctcaaacgagctgggcctcccccaaggatgggcttcaa 1148354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 18372037 - 18372095
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 247  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  18372037 ggcgtctctgagggg-tgcaaacagttcaaacgagctggggctccctcaaggatgggcct 18372095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 29620661 - 29620618
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctc 231  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  29620661 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctc 29620618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 44708291 - 44708348
Alignment:
Q  193 ctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  44708291 ctctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 44708348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 48156953 - 48157005
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcct 247  Q
    |||||||||||||||||||||||  ||||||||||||||||||  ||||||||    
T  48156953 ctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcct 48157005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 9878974 - 9878919
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  ||||||||||||||| ||  |||||||||||    
T  9878974 ctgagggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa 9878919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 34290929 - 34290874
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  ||| ||||||||||||| | |||||||||||    
T  34290929 ctgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaa 34290874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 43207529 - 43207474
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  43207529 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 43207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 53507172 - 53507117
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  53507172 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 53507117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 50939528 - 50939468
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||| ||||||||||||||||  |||||||||||||||||   |||||||||||    
T  50939528 cgtccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 50939468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 8074142 - 8074087
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||  |||||||| ||||| ||||||||||||||  ||||||||||||||||    
T  8074142 ctgagggattgcaaacaactcaatcgagctgggcctcctccaaggatgggcctcaa 8074087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 1105445 - 1105508
Alignment:
Q  198 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1105445 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 1105508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 37514562 - 37514635
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  37514562 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctcctccaaggatgggcctcaagagtgggggtt 37514635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 5129038 - 5128975
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5129038 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggataggcctcaagagtgggg 5128975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 10431504 - 10431442
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10431504 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 10431442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 55255084 - 55255145
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55255084 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 55255145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 17679221 - 17679283
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17679221 ggcgtccctgagggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaa 17679283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 47127985 - 47128047
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47127985 ggcgtccctgagggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaa 47128047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 48208461 - 48208516
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48208461 ctgagggggtgcaaacagctcaaacgagttgggcctccctcaaggatgggcctcaa 48208516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 45560758 - 45560704
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45560758 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 38209891 - 38209842
Alignment:
Q  200 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38209891 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 13459795 - 13459850
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  13459795 ctgagggggtgcaaacagctcaaacgagctgagcctcccttaaggatgggcctcaa 13459850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 9579516 - 9579469
Alignment:
Q  203 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9579516 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcttcaa 9579469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 9585211 - 9585164
Alignment:
Q  203 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9585211 gtgcaaacagctcaaacgagctgggcctccctcaaggatgggcttcaa 9585164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 27596694 - 27596639
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||    
T  27596694 ctgagggggtgcgaacagctcaaacgagctgggcctcccccgaggatgggcctcaa 27596639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 32915301 - 32915351
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaag 238  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  32915301 ggcgtccctgagggggtgcaaacagctcaaacgagttgggcctccctcaag 32915351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 34769583 - 34769533
Alignment:
Q  200 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  34769583 ggggtgcaaatagctcaaacgagttgggcctccctcaaggatgggcctcaa 34769533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 35780609 - 35780556
Alignment:
Q  197 gagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||| ||||||||||||||| || |||| ||||||||    
T  35780609 gagggggtgcaaacagctcaaccgagctgggcctcccccacggataggcctcaa 35780556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 54779452 - 54779500
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgg 243  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||||    
T  54779452 ctgagggagtgcaaacagctcaaccgagctgggcctcccccaaggatgg 54779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 24969253 - 24969308
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  24969253 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 24969308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 16844839 - 16844893
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  16844839 tgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 16844893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 37777513 - 37777459
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||    
T  37777513 tgagggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaa 37777459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 32128403 - 32128444
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctca 236  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  32128403 ctgagggggtgcaaacagctcaacagagctgggcctccctca 32128444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 23510962 - 23510922
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggc 228  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  23510962 ggcgtccctgagggggtgcaaacagctcaaacgaactgggc 23510922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 54083538 - 54083478
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| |||||||||||||||||||||||  ||||||||| |||||||   |||||||||||    
T  54083538 cgtccctgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaa 54083478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 2791031 - 2790988
Alignment:
Q  193 ctctgagggggtgcaaacagctcaaacgagctgggcctccctca 236  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  2791031 ctctgagggggtgcaaacagctcaacagagctgggtctccctca 2790988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 10978148 - 10978191
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctc 231  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||    
T  10978148 ggcgtccctgagagggtgcaaacagctcaaacgagctgcgcctc 10978191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 23510917 - 23510887
Alignment:
Q  220 gagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||||||||||    
T  23510917 gagctgggcctccctcaaggatgggcctcaa 23510887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 40089340 - 40089390
Alignment:
Q  200 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  40089340 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 40089390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 51964204 - 51964240
Alignment:
Q  214 tcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| |||| |||||||||||||||||||||||||    
T  51964204 tcaaacaagctaggcctccctcaaggatgggcctcaa 51964240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 24711204 - 24711131
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  24711204 ggcgtccctgagggggtgcaaacagctcaaacaagctgggcctcccccaaggatgggcctcaagagtgggggtt 24711131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 30832717 - 30832656
Alignment:
Q  200 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30832717 ggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaagagtgggggtt 30832656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 23070943 - 23070889
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23070943 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 13727711 - 13727650
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13727711 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctca 13727650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 21280337 - 21280394
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 245  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21280337 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggc 21280394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 21479288 - 21479349
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21479288 ggcgtccctgagggggtgcaaacagctaaaacgagctgggcctccctcaaggatgggcctca 21479349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 19741283 - 19741223
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19741283 cgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 19741223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 12083694 - 12083640
Alignment:
Q  196 tgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12083694 tgagggggtgcaaacagctcaaacgagctgggccttcctcaaggatgggcctcaa 12083640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 27314826 - 27314773
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 241  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27314826 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 27314773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 33773904 - 33773964
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 249  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  33773904 ggcgtccctgagggggtgcaaaca-ctcaaatgagctgggcctccctcaaggatgggcctca 33773964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 1156072 - 1156017
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  1156072 ctgagggggtgcaaacagctcaaacgagctaggtctcccttaaggatgggcctcaa 1156017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 27579137 - 27579084
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggat 241  Q
    |||||| || ||||||||||| ||||||||||||||||||||||||||||||||    
T  27579137 ggcgtccctaagggggtgcaaccagctcaaacgagctgggcctccctcaaggat 27579084  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 19986980 - 19987032
Alignment:
Q  198 agggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||||||||||||||||||  ||||||||||||||||||  |||||||||||    
T  19986980 agggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaa 19987032  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 17353770 - 17353825
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  17353770 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 17353825  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 27788977 - 27788922
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  27788977 ctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 27788922  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 20712007 - 20711952
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||  |||||||||||||||||   |||||||||||    
T  20712007 ctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 20711952  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 235519 - 235473
Alignment:
Q  190 cgtctctgagggggtgcaaacagctcaaacgagctgggcctccctca 236  Q
    |||| |||||||||||||||||||| ||  |||||||||||||||||    
T  235519 cgtccctgagggggtgcaaacagcttaacagagctgggcctccctca 235473  T

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Target: scaffold0070 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 1015 - 1077
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1015 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaa 1077  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 181439 - 181480
Alignment:
Q  188 ggcgtctctgagggggtgcaaacagctcaaacgagctgggcc 229  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  181439 ggcgtccctgagggggtgcaaacagctcaaacgagctgggcc 181480  T

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Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 181851 - 181890
Alignment:
Q  222 gctgggcctccctcaaggatgggcctcaagagtgggggtt 261  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  181851 gctgggcctccctcaaggatgggtctcaagagtgggggtt 181890  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 106390 - 106445
Alignment:
Q  195 ctgagggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 250  Q
    ||||| |||||||||||||||||  |||||||||||||||||   |||||||||||    
T  106390 ctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 106445  T

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