View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15963_high_2 (Length: 340)
Name: NF15963_high_2
Description: NF15963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15963_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 7008286 - 7008603
Alignment:
| Q |
17 |
atgtacatggtatgcatgcacgggaacttaggctttggcatcaccaaaatcagttagtt-atcttacgtacactactcctactaaaccatacttacccac |
115 |
Q |
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| T |
7008286 |
atgtacatggtctgcatgcacgggaacttaggctttggcatcaccaaaatcagttagtttatcttacgtacactactcctgctaaaccatacttacccac |
7008385 |
T |
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| Q |
116 |
atgaaagataactcgtacgtcannnnnnnagtacaagataactcgtgttgttacgcattacttgattttaaaatcactttatttaactaaatgactattt |
215 |
Q |
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| T |
7008386 |
atgaa-gataactcgtacgtcatttttttagtacaagataactcgttttgttacgcattacttgattttaaaatcactttatttaactaaatgactattt |
7008484 |
T |
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| Q |
216 |
taaggatctgaatttcgttttgtttaagttttaaaatataatcaacctaagaaaatgatttttggaaataaagtaatataaaacaaggaaataaatcata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
7008485 |
taaggatctgaatttcgttttgtttaagttttaaaatataatcaacctaagaaaatgatttttggaaataaagtaatacaaaacaagcaaataaatcata |
7008584 |
T |
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| Q |
316 |
acgtccctccctatgcttc |
334 |
Q |
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||||||||||||| |||| |
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| T |
7008585 |
gcgtccctccctatacttc |
7008603 |
T |
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