View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15963_low_1 (Length: 533)
Name: NF15963_low_1
Description: NF15963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15963_low_1 |
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| [»] scaffold1360 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 38049453 - 38049105
Alignment:
| Q |
16 |
tacacagaaaagaattaactgatgtcattacnnnnnnnn-atttgtgattgtgtc-aaaagcaatatgcttaaggattacttgatgcttgtgtcaaatag |
113 |
Q |
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| T |
38049453 |
tacacagaaaagaattaactgatgtcattacattttttttatttgtgattgtgtccaaaagcaatatgcataaggattact--atgcttgtgtcaaatag |
38049356 |
T |
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| Q |
114 |
ttaagtagcaaacataatgagattgagagatcgatctccactcttagaataatattaacaattaatactaacaatattaaggtaggaggggttgtatagt |
213 |
Q |
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| T |
38049355 |
ttaagtagcaaacacaatgagattgagagatcgatctccactcttagaataatattaacaattaatactaacaatattaaggtaggaggggttgtatagt |
38049256 |
T |
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| Q |
214 |
tcaactaattttgatctaagggtaagttgagaggaaaggagtatgaggaacgcgggtcagacctaatgtgagtaaaaatattaattttaaaactaattac |
313 |
Q |
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| T |
38049255 |
tcaactaattttgatctaagggtaagttgagaggaaaggagtatg-ggaacccgggtcagacctaatgggagtaaaaatattaatttaaaaattaattac |
38049157 |
T |
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| Q |
314 |
taatatttattgtttnnnnnnnnntaacactgttcatatttgatttgttgttt |
366 |
Q |
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| T |
38049156 |
taatatttattgttt-aaaaaaaataacactattcatatttgatttgttgttt |
38049105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 396 - 488
Target Start/End: Complemental strand, 38049084 - 38048992
Alignment:
| Q |
396 |
ctaaagcatccttatatattgacgttacatattaggtctgtttggtaagatcagtaaacgaatttatagcaaatagcttataagctcgtttga |
488 |
Q |
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| T |
38049084 |
ctaaagcatccttatatattgaccttacatattgggtctgtttggtaagactagaaaacgaatttatagcaaatagtttataagttcgtttga |
38048992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 490
Target Start/End: Complemental strand, 3932410 - 3932349
Alignment:
| Q |
429 |
aggtctgtttggtaagatcagtaaacgaatttatagcaaatagcttataagctcgtttgatc |
490 |
Q |
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| T |
3932410 |
aggtctgtttggtaagaccaaaaaatgagcttatagcgaatagcttataagctcgtttgatc |
3932349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 52225260 - 52225318
Alignment:
| Q |
430 |
ggtctgtttggtaagatcagtaaacgaatttatagcaaatagcttataagctcgtttga |
488 |
Q |
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| T |
52225260 |
ggtctgtttggtaagatcagaaaatgagcttatagctcatagcttataagctcgtttga |
52225318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1360 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold1360
Description:
Target: scaffold1360; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 490
Target Start/End: Complemental strand, 1405 - 1344
Alignment:
| Q |
429 |
aggtctgtttggtaagatcagtaaacgaatttatagcaaatagcttataagctcgtttgatc |
490 |
Q |
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| T |
1405 |
aggtctgtttggtaagaccaaaaaatgagcttatagcgaatagcttataagctcgtttgatc |
1344 |
T |
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