View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15963_low_2 (Length: 476)
Name: NF15963_low_2
Description: NF15963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15963_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 231 - 476
Target Start/End: Complemental strand, 52348943 - 52348694
Alignment:
| Q |
231 |
gcctaaaaaattcttggagatatagttgttatagagaaaatgaaaatgaccacaaatttt-gttctgccttgctcttactattctattgcgttttatatt |
329 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
52348943 |
gcctaaaaaattctcggagatatagttgttatagagaaaatgaaaatgaccacaaatttttgttctgccctgctcttactattctattgcgttttatatt |
52348844 |
T |
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| Q |
330 |
ctttagttctcataataggnnnnnnnnn--tgtacattattgtatatgtatattatttatacacagtactatcaagagc-ggaagagtataagagtttac |
426 |
Q |
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| T |
52348843 |
ctttagttctcataatagcaaaaaaaaaaatgtacattattgtatatgtatattatttatacacagtactatcaagagcaggaagagtataagagtttac |
52348744 |
T |
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| Q |
427 |
tccagacacaatgcatcagagtttctacagggatggatctatgaagtagg |
476 |
Q |
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| T |
52348743 |
tccagacacaatgcatcagagtttctacagggatggatctatgaagtagg |
52348694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 52349166 - 52349001
Alignment:
| Q |
8 |
agtgagaagaaaaaagaggtaaaatgttattataaatatggagagttaatttgagttttcttcagcaaatcaacttgagtctttttggtgtatcggatgc |
107 |
Q |
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| T |
52349166 |
agtgagaagaaaaaagaggtaaaatgttattataaatatggagagttaatttgagttttcttcagcaaatcaacttgagtctttttggtgtatcggatgc |
52349067 |
T |
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| Q |
108 |
ttgagtatagttgtatgtcatgagagtttgcaattgttttcaccgtaaaaattgcacattgagtat |
173 |
Q |
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| T |
52349066 |
ttgagtatagctgtatgtcatgagagtttgcaattgttttcaccgtaaaaattgcacattgagtat |
52349001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 35875713 - 35875655
Alignment:
| Q |
8 |
agtgagaagaaaaaagaggtaaaatgttattataaatatggagagttaatttgagtttt |
66 |
Q |
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| T |
35875713 |
agtgtgaagaagaaataggtagattgttattataaaaatggaaagttaatttgagtttt |
35875655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 36071608 - 36071576
Alignment:
| Q |
34 |
ttattataaatatggagagttaatttgagtttt |
66 |
Q |
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| T |
36071608 |
ttattataaatatgaagagttaatttgagtttt |
36071576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 15230388 - 15230424
Alignment:
| Q |
35 |
tattataaatatggagagttaatttgagttttcttca |
71 |
Q |
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| T |
15230388 |
tattataaatatggagagttagtttgagtttttttca |
15230424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 8161329 - 8161365
Alignment:
| Q |
33 |
gttattataaatatggagagttaatttgagttttctt |
69 |
Q |
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| T |
8161329 |
gttattataaatatgaagagttaatttgaattttctt |
8161365 |
T |
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