View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15963_low_3 (Length: 351)
Name: NF15963_low_3
Description: NF15963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15963_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 38299847 - 38299509
Alignment:
| Q |
1 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299847 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttc |
38299748 |
T |
|
| Q |
101 |
tcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacataaccactccatgatgttcttcattgagtcgt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
38299747 |
tcttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacttaaccattccatgatgttcttcattgagtcgt |
38299648 |
T |
|
| Q |
201 |
actcgcaatgacgaaaggaataatcagatgaaaggatcatggatgcacaagtttttactaaccgtgatatcttttgctccattgtctcgttatcagagtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
38299647 |
actcgcaatgacgaaaggaataatcagatgaaaggatcatggatgcacaagtttttactaaccgtgattccttttgctccattgtctcgtcatcagagtc |
38299548 |
T |
|
| Q |
301 |
cagtaaatctaccgcgcaatcggattccatattttcttg |
339 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
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| T |
38299547 |
cagtaaatctacctcgcaatcggattccatattttcttg |
38299509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 38305766 - 38305663
Alignment:
| Q |
1 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||| || |||||| |
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| T |
38305766 |
caaacagatataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttc |
38305667 |
T |
|
| Q |
101 |
tctt |
104 |
Q |
| |
|
|||| |
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|
| T |
38305666 |
tctt |
38305663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 38316494 - 38316379
Alignment:
| Q |
1 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttc |
100 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||| || |||||| |
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| T |
38316494 |
caaacaaatataagtctcagtggtgttagattcccacaaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttc |
38316395 |
T |
|
| Q |
101 |
tcttcagtgtacaaat |
116 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
38316394 |
tctttcgtgtacaaat |
38316379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 38320592 - 38320475
Alignment:
| Q |
1 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttc |
100 |
Q |
| |
|
|||||| ||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||| ||||||||| |
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|
| T |
38320592 |
caaacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttc |
38320493 |
T |
|
| Q |
101 |
tcttcagtgtacaaatcc |
118 |
Q |
| |
|
||| |||||||||||| |
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|
| T |
38320492 |
gctttcgtgtacaaatcc |
38320475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38313085 - 38313023
Alignment:
| Q |
1 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctatt |
63 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38313085 |
caaacaaatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatt |
38313023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 38325312 - 38325251
Alignment:
| Q |
28 |
agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaa |
89 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
38325312 |
agattcccacaaatcaaaagttaaagataccctattaggaatggtagccaattgttgtttaa |
38325251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 38308472 - 38308385
Alignment:
| Q |
28 |
agattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaa |
115 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||| |||||| |||||||| |||||||| | || |||||||||| ||||||||| |
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| T |
38308472 |
agattcccacaactcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 38850851 - 38850966
Alignment:
| Q |
1 |
caaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttc |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||| | |||||||||| || ||||| |
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|
| T |
38850851 |
caaacaaatataagtctcagtagtgttagattcccacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttc |
38850950 |
T |
|
| Q |
101 |
tcttcagtgtacaaat |
116 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
38850951 |
tctttcgtgtacaaat |
38850966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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