View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15964_high_6 (Length: 216)
Name: NF15964_high_6
Description: NF15964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15964_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 31226696 - 31226528
Alignment:
| Q |
20 |
gcagctgcaaagccagcagcaaagaaagttgcggcggcaaagaagaaagctccggtgaagagcgtcaagcctaagactaagactgttaagtctccggcga |
119 |
Q |
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| T |
31226696 |
gcagctgcaaagccagcagcaaagaaagttgcggcggcaaagaagaaagctccggtgaagagcgtcaagcctaagactaagactgttaagtctccggcga |
31226597 |
T |
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| Q |
120 |
agaaggtttccgtgaagagagggggaaggaaatgagagttagttagtgtctttgtagcgttggcattgtaaag |
192 |
Q |
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| T |
31226596 |
agaaggtttccgtgaagagagggggaaggaaatgagagt----tagtgtctttgtagcgttggcattgtaaag |
31226528 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 31173776 - 31173878
Alignment:
| Q |
56 |
gcaaagaagaaagctccggtgaagagcgtcaagcctaagactaagactgttaagtctccggcgaagaaggtttccgtgaagagagggggaaggaaatgag |
155 |
Q |
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|||||||||||| |||| ||||||| ||| |||||||||||||||||||||| ||||||||| ||||| ||| | | |||||||||||||||||||||| |
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| T |
31173776 |
gcaaagaagaaaactccagtgaagaacgtgaagcctaagactaagactgttaggtctccggctaagaaagttgcgatcaagagagggggaaggaaatgag |
31173875 |
T |
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| Q |
156 |
agt |
158 |
Q |
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||| |
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| T |
31173876 |
agt |
31173878 |
T |
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