View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15964_low_1 (Length: 693)

Name: NF15964_low_1
Description: NF15964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15964_low_1
NF15964_low_1
[»] chr7 (1 HSPs)
chr7 (40-314)||(12280248-12280522)
[»] chr4 (7 HSPs)
chr4 (354-615)||(23257992-23258254)
chr4 (354-615)||(23275870-23276132)
chr4 (349-553)||(27542695-27542898)
chr4 (356-615)||(11136751-11137008)
chr4 (494-680)||(23268369-23268572)
chr4 (132-225)||(23258350-23258443)
chr4 (132-225)||(23276228-23276321)
[»] chr5 (2 HSPs)
chr5 (310-544)||(8985282-8985519)
chr5 (575-615)||(8984660-8984700)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 40 - 314
Target Start/End: Original strand, 12280248 - 12280522
Alignment:
Q  40 tcctattattgtttgttatatacatctgataattgattcttannnnnnnnnnnnnnnccttcttctgt-tagtgtacacatagtttattgccaattctat 138  Q
    ||||||||||||||||||||||||||||||||||||||||||               ||||||| ||| ||||||| |||||||||||||||||||||||    
T  12280248 tcctattattgtttgttatatacatctgataattgattcttatttttatttttttt-ccttcttttgtctagtgtatacatagtttattgccaattctat 12280346  T
Q  139 actcccaaatttgtgtgtttgaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctttcatgtataaact 238  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12280347 actcccaaatttgtgtctttcaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctttcatgtataaact 12280446  T
Q  239 gatatgtgtttgttaagtgtttaattaagttgttaatctatacaaggccttgatctggtatatctttcgaattact 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12280447 gatatgtgtttgttaagtgtttaattaagttgttaatctatacaaggccttgatctggtatatctttcgaattact 12280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 2e-97; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 354 - 615
Target Start/End: Complemental strand, 23258254 - 23257992
Alignment:
Q  354 actgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactgtcacccacagttctgcaggctg 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  23258254 actgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcaggctg 23258156  T
Q  454 ctttcaatgtagatccggaagttgagaaactcttccgttcaaagaggaccgctgatgccattttctcccctcctccaaattaaagtagaatggaaataag 553  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23258155 ctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaataag 23258056  T
Q  554 tcttagt--atttttaatggcattggaaataagctttagtaagccgttatagataatagttttt 615  Q
    | |||||   | ||| |||||||||||||||||||| | |||| ||||||||| | ||||||||    
T  23258055 ttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagttttt 23257992  T

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Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 354 - 615
Target Start/End: Complemental strand, 23276132 - 23275870
Alignment:
Q  354 actgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactgtcacccacagttctgcaggctg 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  23276132 actgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcaggctg 23276034  T
Q  454 ctttcaatgtagatccggaagttgagaaactcttccgttcaaagaggaccgctgatgccattttctcccctcctccaaattaaagtagaatggaaataag 553  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23276033 ctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaataag 23275934  T
Q  554 tcttagt--atttttaatggcattggaaataagctttagtaagccgttatagataatagttttt 615  Q
    | |||||   | ||| |||||||||||||||||||| | |||| ||||||||| | ||||||||    
T  23275933 ttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagttttt 23275870  T

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Target: chr4; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 349 - 553
Target Start/End: Complemental strand, 27542898 - 27542695
Alignment:
Q  349 tactgactgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactgtcacccacagttctgca 448  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||    
T  27542898 tacttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcgctatcgcctacggttctgca 27542800  T
Q  449 ggctgctttcaatgtagatccggaagttgagaaactcttccgttcaaagaggaccgctgatgccattttctcccctcctccaaattaaagtagaatggaa 548  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  27542799 ggctgctttcaatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaa 27542700  T
Q  549 ataag 553  Q
    |||||    
T  27542699 ataag 27542695  T

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Target: chr4; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 356 - 615
Target Start/End: Original strand, 11136751 - 11137008
Alignment:
Q  356 tgtggttatgattgttgttttttgcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactgtcacccacagttctgcaggctgct 455  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| || ||||||    
T  11136751 tgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttctacaagctgct 11136850  T
Q  456 ttcaatgtagatccggaagttgagaaactcttccgttcaaagaggaccgctgatgccattttctcccctcctccaaattaaagtagaatggaaataagtc 555  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||| |||||     
T  11136851 ttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattgaagtagaatggaattaagtt 11136950  T
Q  556 ttagtatttttaatggcattggaaataagctttagtaagccgttatagataatagttttt 615  Q
    ||  ||||||| |||||| || ||||| | ||||  ||||||||||||| ||||||||||    
T  11136951 tt--tattttttatggcaatgaaaatatgttttaacaagccgttatagacaatagttttt 11137008  T

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Target: chr4; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 494 - 680
Target Start/End: Complemental strand, 23268572 - 23268369
Alignment:
Q  494 aaagaggaccgctgatgccattttctcccctcctccaaattaaagtagaatggaaataagtctt-agtatttttaatggcattggaaataagctttagta 592  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||||||||| ||    
T  23268572 aaagaggaccgctgatgccattttcttccctcctccaaattaaagtagaatggaaataagtttttagtttttttaatggcattgcaaataagctttacta 23268473  T
Q  593 agccgttatagataatagttttttctttct----------------ttctgcacttctatttcggatttaaaagaagttgaatgattgcctcaatttatt 676  Q
    ||||||||||||||||||||||||||||||                |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  23268472 agccgttatagataatagttttttctttctttctactttattaagtttctacacttctattttggatttaaaagaaattgaatgattgcctcaatttatt 23268373  T
Q  677 tttg 680  Q
    ||||    
T  23268372 tttg 23268369  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 23258443 - 23258350
Alignment:
Q  132 attctatactcccaaatttgtgtgtttgaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctt 225  Q
    ||||||||||||||| ||||||| || || |||||||||| ||||||||||||||||||  ||| |||||| | |||||||| |||||| ||||    
T  23258443 attctatactcccaagtttgtgtcttcgagatgtttatttagaatttgaagtcactctcaacataacataagagctttcatgtttctttttctt 23258350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 23276321 - 23276228
Alignment:
Q  132 attctatactcccaaatttgtgtgtttgaaatgtttatttggaatttgaagtcactctctgcatgacataacatctttcatgattctttatctt 225  Q
    ||||||||||||||| ||||||| || || |||||||||| ||||||||||||||||||  ||| |||||| | |||||||| |||||| ||||    
T  23276321 attctatactcccaagtttgtgtcttcgagatgtttatttagaatttgaagtcactctcaacataacataagagctttcatgtttctttttctt 23276228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 310 - 544
Target Start/End: Complemental strand, 8985519 - 8985282
Alignment:
Q  310 ttactgattgtagtgcaacttgagtagtaatcaaggaat----tactgactgtggttatgattgttgttttttgcagtcctgtatttacacacatggctg 405  Q
    ||||||||||||||||||  |||| | ||||||||||||    |||| ||| || |||||||| ||||||||| ||||||||||||||||||||||||||    
T  8985519 ttactgattgtagtgcaatatgagaaataatcaaggaatattatacttactatgattatgatttttgtttttt-cagtcctgtatttacacacatggctg 8985421  T
Q  406 gaagttcttcggtgtggaaggcactgtcacccacagttctgcaggctgctttcaatgtagatccggaagttgagaaactcttccgttcaaagaggaccgc 505  Q
    |||||||||||||||||||||| || ||||| | |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||    
T  8985420 gaagttcttcggtgtggaaggccctatcacctagagttctgcagactgctttcaatgtagatccagaagttgagaagctcttccgttcaaagaggactgc 8985321  T
Q  506 tgatgccattttctcccctcctccaaattaaagtagaat 544  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  8985320 tgatgccattttcttccctcctccaaattaaagtagaat 8985282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 615
Target Start/End: Complemental strand, 8984700 - 8984660
Alignment:
Q  575 tggaaataagctttagtaagccgttatagataatagttttt 615  Q
    ||||||||||||| | |||||||||||||| ||||||||||    
T  8984700 tggaaataagcttcaataagccgttatagacaatagttttt 8984660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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