View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15964_low_2 (Length: 547)
Name: NF15964_low_2
Description: NF15964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15964_low_2 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 68 - 530
Target Start/End: Complemental strand, 1212971 - 1212511
Alignment:
| Q |
68 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgatgcattgtacattttggttttggttcctcgatatatttatactatta |
167 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1212971 |
agcatgggacctaagccatcgcaccctcaacctatgcctagggtcggccttggtgcattgtacattttggttttggttcctcgatatatttatactatta |
1212872 |
T |
|
| Q |
168 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcaaaactgcccaaggctccctga |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
1212871 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcagaactgcctaaggctccctga |
1212772 |
T |
|
| Q |
268 |
aattatatataaatcccaacaaagattcgannnnnnngctttattcagagagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
367 |
Q |
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|||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1212771 |
aattatatataaatcccaacaaagattcgaattttttgcttcattc--agagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
1212674 |
T |
|
| Q |
368 |
tttgtgccaagccacattaactannnnnnnnnnnnnctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataag |
467 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1212673 |
tttgtgccaagccacattaactatttttctttttctctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataag |
1212574 |
T |
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| Q |
468 |
ccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgt |
530 |
Q |
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| T |
1212573 |
ccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgt |
1212511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 1215925 - 1215872
Alignment:
| Q |
16 |
ctaattagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaag |
69 |
Q |
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| T |
1215925 |
ctaattagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaag |
1215872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 14286647 - 14286608
Alignment:
| Q |
77 |
cctaagccatcgcacccccgacctatgcctagggtcggcc |
116 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |
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| T |
14286647 |
cctaggccatcgcacccccgacctatgtctagggtcggcc |
14286608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 23763771 - 23763809
Alignment:
| Q |
72 |
tgggacctaagccatcgcacccccgacctatgcctaggg |
110 |
Q |
| |
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| T |
23763771 |
tgggacctaagctatcgcacccccaacctatgcctaggg |
23763809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 68 - 530
Target Start/End: Complemental strand, 14134 - 13673
Alignment:
| Q |
68 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgatgcattgtacattttggttttggttcctcgatatatttatactatta |
167 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14134 |
agcatgggacctaagccatcgcaccctcaacctatgcctagggtcggccttggtgcattgtacattttggttttggttcctcgatatatttatactatta |
14035 |
T |
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| Q |
168 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcaaaactgcccaaggctccctga |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
14034 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcagaactgcctaaggctccctga |
13935 |
T |
|
| Q |
268 |
aattatatataaatcccaacaaagattcgannnnnnngctttattcagagagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
367 |
Q |
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|||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13934 |
aattatatataaatcccaacaaagattcgaattttttgcttcattc--agagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
13837 |
T |
|
| Q |
368 |
tttgtgccaag-ccacattaactannnnnnnnnnnnnctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataa |
466 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13836 |
tttgtgccaagcccacattaactatttttctttttctctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataa |
13737 |
T |
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| Q |
467 |
gccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgt |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13736 |
gccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgt |
13673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 30695929 - 30695882
Alignment:
| Q |
21 |
tagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaa |
68 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
30695929 |
tagcttatcatagcaacaagatgcagcaaaaatgaaaacaattactaa |
30695882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 39482941 - 39482888
Alignment:
| Q |
68 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgat |
121 |
Q |
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|||||||| |||| ||| ||| ||| ||||||||| |||||||||||||||||| |
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| T |
39482941 |
agcatgggccctaggccgtcgtaccaccgacctatacctagggtcggccttgat |
39482888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 12027470 - 12027430
Alignment:
| Q |
77 |
cctaagccatcgcacccccgacctat-gcctagggtcggcc |
116 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||| |
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| T |
12027470 |
cctaagacatcgcacccccgacctatggcctagggtcggcc |
12027430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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