View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15964_low_4 (Length: 421)
Name: NF15964_low_4
Description: NF15964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15964_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 164 - 397
Target Start/End: Original strand, 31226267 - 31226514
Alignment:
| Q |
164 |
ctaattaagcttgtattctattttaaatttattttttctaaattttgaacaaattatacttcaggtgcgtcgaacattttcccatggaaattgaaatcta |
263 |
Q |
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| T |
31226267 |
ctaattaagcttgtattctatttttaatttattttttctaaattttgaacaaattatacttcaggtgcgtcgaacattttcccatagaaattgaaatcta |
31226366 |
T |
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| Q |
264 |
tctcatatttaatgtgcttaatctcaattatcgaaagcagtaaatcgaaagaaa--cagaaagaaag---------nnnnnnnctttattatga---act |
349 |
Q |
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| T |
31226367 |
tctcatatttaatgtgcttaatctcaattatcgaaagcagtaaatcgaaagaaatccagaaagaaagaaagaaagaaagaaaactttattatgaactact |
31226466 |
T |
|
| Q |
350 |
attaatctattccaagtaactaaaccgaaaacttaaaagaccatagtt |
397 |
Q |
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| T |
31226467 |
attaatctattccaagcaactaaaccgaaaacttaaaagaccatagtt |
31226514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 31226069 - 31226227
Alignment:
| Q |
18 |
ttaataatgtgtttgtgaatgggtgcaccctaaaaatcaccggagggaaaatattatt---gagacaacaaaaccttttatttttgcagcattacactat |
114 |
Q |
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| T |
31226069 |
ttaataatctgtttgtgtatgggtgcacc-taaaagtcaccggagaaaaaatattattatggagacaacaaaaccttttatttttgcaacattacactat |
31226167 |
T |
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| Q |
115 |
taaattctttgattggcctaaaaggctattattggcagcttccacttaactaattaagct |
174 |
Q |
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| T |
31226168 |
taaattctttgattggcctaaaaggctattatcggcaccttccacttaactaattaagct |
31226227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 47891743 - 47891638
Alignment:
| Q |
40 |
gtgcaccctaaaaatcaccggagggaaaatattatt---gagacaacaaaaccttttatttttgcagcattacactattaaattctttgattggcctaaa |
136 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47891743 |
gtgcaccctaaaagtcaccggagggaaaatattattatggagacaacaaaaccttttatttttgcagcattacactattaaactctttgattggcctaaa |
47891644 |
T |
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| Q |
137 |
aggcta |
142 |
Q |
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|||||| |
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| T |
47891643 |
aggcta |
47891638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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