View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15965_high_2 (Length: 519)
Name: NF15965_high_2
Description: NF15965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15965_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 26147534 - 26147757
Alignment:
| Q |
19 |
acagtcttggccttgcatatcacagtgttgctgctgatggaccattatatacgctacctgaaaaatttcttgtgattaaaaaaccagcttctgctacatc |
118 |
Q |
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| T |
26147534 |
acagtcttggccttgcatatcaagttgttgctgctgatggaccattatatacgctacctgaaaaatttcttgtgattagaaaaccagcttctgctacatc |
26147633 |
T |
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| Q |
119 |
atctgaagaagttgttgtatcatctgaagaagctgcataaagtaacttgagttagtgtttctacaattataatttatcacattcagttgacatatttgtg |
218 |
Q |
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| T |
26147634 |
atctgaagaagttgttgtatcatctgaagaagctgcataaagtaacttgagtttgtgtttctacgattataatttatcacattcagttgacatatttgtg |
26147733 |
T |
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| Q |
219 |
ttatcattgttttgtaacactatt |
242 |
Q |
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| T |
26147734 |
ttatcattgttctgtaacactatt |
26147757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 342 - 506
Target Start/End: Original strand, 26147753 - 26147916
Alignment:
| Q |
342 |
ctatttatttacattggatttctttttctgcactgttgaagatggcacgatcttgccattgaattgttatcaaatttatgcaactgcccacattgctaag |
441 |
Q |
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| T |
26147753 |
ctatttatttacattg-atttctttttctgcactgttgaagatggcacgatcttgccattgaattgttatcaaatttatgcaactgcccacattgctaag |
26147851 |
T |
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| Q |
442 |
atcaatcctttcagaactttgaaaattattatctagtgttgatatttgttatctcatttgtcttc |
506 |
Q |
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| T |
26147852 |
atcaatcctttcagaactttgaaaattattatctagtgttgatatttgttatctcatttgtcttc |
26147916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 33872474 - 33872359
Alignment:
| Q |
19 |
acagtcttggccttgcatatcacagtgttgctgctgatggaccattatatacgctacctgaaaaatttctt-----gtgattaaaaaaccagcttctgct |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |||||||| ||||||| |
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| T |
33872474 |
acagtcttggccttgcatatcaaggtgttgctgctgatggaccgttatatacgctacctgaaaaatttcctgtgaggtgattagaaaaccagattctgct |
33872375 |
T |
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| Q |
114 |
acatcatctgaagaag |
129 |
Q |
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| T |
33872374 |
gcatcatctgaagaag |
33872359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 33872339 - 33872261
Alignment:
| Q |
194 |
atcacattcagttgacatatttgtgttatcat---tgttttgtaacactattctgtctagtattaactttgacgatttt |
269 |
Q |
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| T |
33872339 |
atcacattcagttgacaaatttatgttatcatcattgttttgtaacactattctttctggtgttaactttgaggatttt |
33872261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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