View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15965_high_6 (Length: 232)
Name: NF15965_high_6
Description: NF15965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15965_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 31278744 - 31278547
Alignment:
| Q |
17 |
gatatgactggtactgggacaataaaaatatacaatttaggcgacggaaaagatttcatcagcaatttacctgatgaaattcttcatcacattctttcgt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31278744 |
gatatggctggtactgggacaataaaaatatacaatgtaggcgacggaaaagatttcatcagcaatttacctgatgaaattcttcatcacattctttcgt |
31278645 |
T |
|
| Q |
117 |
tactccctgccaaagatgcagtaggaacttccatattagcaagaaggtggaagtctttgtggatcgacttatctgcatttaattttgacaggccaacc |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31278644 |
tactccctgccaaagatgccgtaggaacttccatattagcaagaaggtggaagtctttgtggatcgacttatctgcatttaattttgacaggccaacc |
31278547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 1095059 - 1095109
Alignment:
| Q |
108 |
ttctttcgttactccctgccaaagatgcagtaggaacttccatattagcaa |
158 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
1095059 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaa |
1095109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 14729470 - 14729410
Alignment:
| Q |
96 |
ttcttcatcacattctttcgttactccctgccaaagatgcagtaggaacttccatattagc |
156 |
Q |
| |
|
|||||| ||| |||||||| ||||||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
14729470 |
ttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagc |
14729410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 9891847 - 9891797
Alignment:
| Q |
108 |
ttctttcgttactccctgccaaagatgcagtaggaacttccatattagcaa |
158 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
9891847 |
ttctttcgttactccctaccaaagatgctgtaagaacttccatattagcaa |
9891797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 17594017 - 17594077
Alignment:
| Q |
96 |
ttcttcatcacattctttcgttactccctgccaaagatgcagtaggaacttccatattagc |
156 |
Q |
| |
|
|||||| ||| |||||||| ||||||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
17594017 |
ttcttcttcatattctttctttactccctactaaagatgctgtaagaacttccatattagc |
17594077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 16130607 - 16130715
Alignment:
| Q |
96 |
ttcttcatcacattctttcgttactccctgccaaagatgcagtaggaacttccatattagcaagaaggtggaagtctttgtggatcgacttatctgcatt |
195 |
Q |
| |
|
|||||| ||| |||||||| |||||||| ||||||||| ||| ||||||||||| |||||| | ||||||| ||||||| | |||||||||| || |
|
|
| T |
16130607 |
ttcttcttcatattctttctttactcccgaccaaagatgttgtaagaacttccatactagcaaagaagtggaagcacttgtggacctacttatctgcctt |
16130706 |
T |
|
| Q |
196 |
taattttga |
204 |
Q |
| |
|
| ||||||| |
|
|
| T |
16130707 |
tcattttga |
16130715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University