View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15965_low_4 (Length: 341)
Name: NF15965_low_4
Description: NF15965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15965_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 108 - 322
Target Start/End: Original strand, 2813623 - 2813837
Alignment:
| Q |
108 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatataccaatgattattttaaatttcaaatcatatatt |
207 |
Q |
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| T |
2813623 |
catagtagtcttacatctgcaaaacgttttattattttgcagtttgtaataacaggaacataatatatccatgattattttaaatttcaaatcatatatt |
2813722 |
T |
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| Q |
208 |
atagtggtcatttgtgctatgtatataatttatttacagtagtgatataattaataaaccatatatacgcaagcaatataaagtttaagcataattatta |
307 |
Q |
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| T |
2813723 |
atagtggtcatttgtgctatgtatataatttatttacagtagtgatataattaataaaccatatatacgcaagcaatataaagtttaagtataattatta |
2813822 |
T |
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| Q |
308 |
ctgttgtatatttat |
322 |
Q |
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| T |
2813823 |
ctgttgtatatttat |
2813837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 2813497 - 2813549
Alignment:
| Q |
17 |
cataggggaagatatgcagcaatgccaatggagacagatacttattcatccga |
69 |
Q |
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| T |
2813497 |
cataggggaagatatgcagcaatgccaatggagacagatacttattcatccga |
2813549 |
T |
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