View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15966_high_3 (Length: 435)
Name: NF15966_high_3
Description: NF15966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15966_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 17576747 - 17577141
Alignment:
| Q |
18 |
ataataatgagattcacacttcataannnnnnncacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgag |
117 |
Q |
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| T |
17576747 |
ataataatgagattcacacttcataatttttttcacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgag |
17576846 |
T |
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| Q |
118 |
ttttaatgaaagcttcttagggataggagagatttaatctgaaattttgtgatcctttacatgctacaactccctttttactaaaaaccataacaatatc |
217 |
Q |
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| T |
17576847 |
ttttaatgaaagcttcttagggataggagagatttaatctgaaattttgtgaccctttacatgctacaactccctttttactaaaaaccataacaatacc |
17576946 |
T |
|
| Q |
218 |
tcgtggcataaaggttagtagtattcaggttacttgttagcattagataaaccagtttgctttcttgtgatataattttgactccatcttattgcttaan |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
17576947 |
tcgtggcataaaggttagtagtattcaggttacttgttagcattagataaaccagtttgctttcctgtgatataattctgactccatcttattgcttaa- |
17577045 |
T |
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| Q |
318 |
nnnnnnncccacttttgtgattgaaattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577046 |
-ttttttcccacttttgtgattgaaattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctc |
17577141 |
T |
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