View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15966_low_1 (Length: 638)
Name: NF15966_low_1
Description: NF15966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15966_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 347
Target Start/End: Original strand, 2323757 - 2324087
Alignment:
| Q |
10 |
ataatactgctttaaacaaagagacttgattaagatggattaaaaaac-atgcaattggacatgaaaaccctttatgctatagctagtggattctattaa |
108 |
Q |
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| T |
2323757 |
ataatactgctttaaacaaagagacttgattaagatggattaaaaaactatgcaattggacatgaaaaccctttatgctatagctagtggattctattaa |
2323856 |
T |
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| Q |
109 |
caaatacaatttggttcaattggttgtatttcgctcgccatctttaagaaatttttctagctcgagcgaaaattaaaagcataaaaaatggatgtttgga |
208 |
Q |
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| T |
2323857 |
caaatacaat----------tggttgtatttcgctcgccacctttaagaaatttttctagctcgagcgaaaattaaaagcataaaaaatgaatgtttgga |
2323946 |
T |
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| Q |
209 |
ttcactattttacaactttgaataattttcacctatacacatttttgtagc--ttttttgctgatgtgacacaaccactattataggattagatgacatt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||| |
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| T |
2323947 |
ttcactattttacaactttgaataattttcacctatacacatttttgtagcttttttttactgatgtgacacaacgactattataggattagatgatatt |
2324046 |
T |
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| Q |
307 |
gcagaatcaatcttaaaacaaccatttactagctacatcaa |
347 |
Q |
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| T |
2324047 |
gcagaattaatcttaaaacaaccatttcctagctacatcaa |
2324087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 423 - 622
Target Start/End: Original strand, 2325517 - 2325715
Alignment:
| Q |
423 |
aaaagagtttactataaatacctttatagacacattatatttccccgacaaaaacaagttgacgaatacgaggttttaagcatccattaattgatttcaa |
522 |
Q |
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| T |
2325517 |
aaaaaagtttgctataaatacctttatagacacactct-ttgcccctacaaaaacaagttgaccaagaagaggttttaatcatccattaattgatttcaa |
2325615 |
T |
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| Q |
523 |
tatttaaggatgtcccatgcagcttgcttcagtcatgatgccaaatctgacttgcaaagaaatcttgcagatttccacccttgcgtttggggagattatt |
622 |
Q |
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| T |
2325616 |
tatttaaggatgtcccatgcagcttgcttcagtcatgatgccaaatctgacttgcaaagaaatcttgcagatttccacccttgcgtttggggagattatt |
2325715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 2344858 - 2344895
Alignment:
| Q |
96 |
tggattctattaacaaatacaatttggttcaattggtt |
133 |
Q |
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| T |
2344858 |
tggattctattaacaaatacaatttggttcaattggtt |
2344895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 622
Target Start/End: Original strand, 31158039 - 31158098
Alignment:
| Q |
563 |
ccaaatctgacttgcaaagaaatcttgcagatttccacccttgcgtttggggagattatt |
622 |
Q |
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| T |
31158039 |
ccaaatctgacttgcatagaaatgttgcagattataaacctagcgtttggggagattatt |
31158098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 622
Target Start/End: Original strand, 31198091 - 31198151
Alignment:
| Q |
562 |
gccaaatctgacttgcaaagaaatcttgcagatttccacccttgcgtttggggagattatt |
622 |
Q |
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||||| |||||| |||| |||||| |||| ||||| || ||| |||||||||||||||||| |
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| T |
31198091 |
gccaattctgacatgcatagaaatgttgctgattttcaacctagcgtttggggagattatt |
31198151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 622
Target Start/End: Original strand, 25791651 - 25791710
Alignment:
| Q |
563 |
ccaaatctgacttgcaaagaaatcttgcagatttccacccttgcgtttggggagattatt |
622 |
Q |
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| T |
25791651 |
ccaaatctgacttgcgtagaaatgttgcagattatcaacctagcgtttggggagattatt |
25791710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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